Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HYO64_RS17215 Genome accession   NZ_CP058729
Coordinates   3597348..3597674 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain M164-3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592348..3602674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS17195 - 3592448..3593077 (-) 630 WP_000219967.1 FHA domain-containing protein -
  HYO64_RS17200 gspD 3593118..3595394 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  HYO64_RS17205 - 3595436..3596272 (-) 837 WP_000870031.1 type II secretion system protein N -
  HYO64_RS17210 gspN 3596272..3597015 (-) 744 WP_000730343.1 type II secretion system protein N -
  HYO64_RS17215 hns 3597348..3597674 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  HYO64_RS17220 - 3597869..3598309 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  HYO64_RS17225 - 3598317..3599510 (-) 1194 WP_213067624.1 heme biosynthesis protein HemY -
  HYO64_RS17230 - 3599520..3600359 (-) 840 WP_114153504.1 hypothetical protein -
  HYO64_RS17235 - 3600368..3601135 (-) 768 WP_114153502.1 uroporphyrinogen-III synthase -
  HYO64_RS17240 hemC 3601140..3602057 (-) 918 WP_031946801.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=465082 HYO64_RS17215 WP_000801427.1 3597348..3597674(-) (hns) [Acinetobacter baumannii strain M164-3]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=465082 HYO64_RS17215 WP_000801427.1 3597348..3597674(-) (hns) [Acinetobacter baumannii strain M164-3]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1