Detailed information NTG0465060

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JQ458_RS24655
• Genome accession: NZ_CP069325
• Coordinates: 5312528..5313532 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain R02
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5307528..5318532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQ458_RS24640 (JQ458_24615)	-	5308011..5309018 (+)	1008	WP_010793357.1	TolB family protein	-
JQ458_RS24645 (JQ458_24620)	mutS	5309144..5311711 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JQ458_RS24650 (JQ458_24625)	fdxA	5311778..5312101 (+)	324	WP_003119354.1	ferredoxin FdxA	-
JQ458_RS24655 (JQ458_24630)	rpoS	5312528..5313532 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JQ458_RS24660 (JQ458_24635)	-	5313637..5314530 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
JQ458_RS24665 (JQ458_24640)	-	5314576..5315211 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JQ458_RS24670 (JQ458_24645)	surE	5315244..5315993 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JQ458_RS24675 (JQ458_24650)	truD	5315981..5317048 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
JQ458_RS24680 (JQ458_24655)	ispF	5317045..5317518 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JQ458_RS24685 (JQ458_24660)	fghA	5317589..5318440 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=465060 JQ458_RS24655 WP_003113871.1 5312528..5313532(-) (rpoS) [Pseudomonas aeruginosa strain R02]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=465060 JQ458_RS24655 WP_003113871.1 5312528..5313532(-) (rpoS) [Pseudomonas aeruginosa strain R02]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653