Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HZS87_RS06815 Genome accession   NZ_CP058725
Coordinates   1367272..1367901 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain S171-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362272..1372901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS87_RS06800 helD 1362514..1364568 (-) 2055 WP_001295354.1 DNA helicase IV -
  HZS87_RS06805 yccF 1364691..1365137 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HZS87_RS06810 yccS 1365147..1367309 (+) 2163 WP_162720762.1 YccS family putative transporter -
  HZS87_RS06815 sxy/tfoX 1367272..1367901 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HZS87_RS06820 sulA 1368120..1368629 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  HZS87_RS06825 ompA 1368986..1370026 (+) 1041 WP_000750416.1 porin OmpA -
  HZS87_RS06830 matP 1370102..1370554 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HZS87_RS06835 ycbZ 1370740..1372500 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=465033 HZS87_RS06815 WP_000839153.1 1367272..1367901(-) (sxy/tfoX) [Escherichia coli strain S171-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=465033 HZS87_RS06815 WP_000839153.1 1367272..1367901(-) (sxy/tfoX) [Escherichia coli strain S171-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1