Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HZS86_RS13625 Genome accession   NZ_CP058719
Coordinates   2832255..2832884 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain M159-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2827255..2837884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS86_RS13605 ycbZ 2827656..2829416 (-) 1761 WP_000156518.1 Lon protease family protein -
  HZS86_RS13610 matP 2829602..2830054 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HZS86_RS13615 ompA 2830130..2831170 (-) 1041 WP_000750416.1 porin OmpA -
  HZS86_RS13620 sulA 2831527..2832036 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HZS86_RS13625 sxy/tfoX 2832255..2832884 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HZS86_RS13630 yccS 2832847..2835009 (-) 2163 WP_000875061.1 YccS family putative transporter -
  HZS86_RS13635 yccF 2835019..2835465 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HZS86_RS13640 helD 2835588..2837642 (+) 2055 WP_130062315.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=465023 HZS86_RS13625 WP_000839153.1 2832255..2832884(+) (sxy/tfoX) [Escherichia coli strain M159-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=465023 HZS86_RS13625 WP_000839153.1 2832255..2832884(+) (sxy/tfoX) [Escherichia coli strain M159-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1