Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JQ458_RS08965 Genome accession   NZ_CP069325
Coordinates   1927963..1929405 (+) Length   480 a.a.
NCBI ID   WP_010793818.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain R02     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922963..1934405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ458_RS08945 (JQ458_08935) - 1923631..1925202 (-) 1572 WP_003161496.1 DUF4129 domain-containing protein -
  JQ458_RS08950 (JQ458_08940) - 1925189..1926169 (-) 981 WP_003093893.1 stage II sporulation protein M -
  JQ458_RS08955 (JQ458_08945) - 1926166..1926963 (-) 798 WP_003123273.1 RDD family protein -
  JQ458_RS08960 (JQ458_08950) - 1927001..1927738 (-) 738 WP_003101171.1 hypothetical protein -
  JQ458_RS08965 (JQ458_08955) sbcB 1927963..1929405 (+) 1443 WP_010793818.1 exodeoxyribonuclease I Machinery gene
  JQ458_RS08970 (JQ458_08960) mvaT 1929490..1929864 (-) 375 WP_124117617.1 histone-like nucleoid-structuring protein MvaT -
  JQ458_RS08975 (JQ458_08965) purU 1930124..1930975 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  JQ458_RS08980 (JQ458_08970) - 1931025..1931237 (+) 213 WP_003101176.1 hypothetical protein -
  JQ458_RS08985 (JQ458_08975) - 1931212..1932213 (-) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  JQ458_RS08990 (JQ458_08980) - 1932210..1932971 (-) 762 WP_003101179.1 DUF2334 domain-containing protein -
  JQ458_RS08995 (JQ458_08985) - 1932964..1934079 (-) 1116 WP_003110035.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55421.65 Da        Isoelectric Point: 5.4134

>NTDB_id=465019 JQ458_RS08965 WP_010793818.1 1927963..1929405(+) (sbcB) [Pseudomonas aeruginosa strain R02]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVAL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=465019 JQ458_RS08965 WP_010793818.1 1927963..1929405(+) (sbcB) [Pseudomonas aeruginosa strain R02]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTACGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGCCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGATGAGTGCCAGCAAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438