Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HYI45_RS18380 Genome accession   NZ_CP058714
Coordinates   3879366..3879995 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain M172-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3874366..3884995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYI45_RS18360 ycbZ 3874756..3876516 (-) 1761 WP_000156473.1 Lon protease family protein -
  HYI45_RS18365 matP 3876702..3877154 (+) 453 WP_000877166.1 macrodomain Ter protein MatP -
  HYI45_RS18370 ompA 3877230..3878282 (-) 1053 WP_024175778.1 porin OmpA -
  HYI45_RS18375 sulA 3878638..3879147 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HYI45_RS18380 sxy/tfoX 3879366..3879995 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HYI45_RS18385 yccS 3879958..3882120 (-) 2163 WP_000875033.1 YccS family putative transporter -
  HYI45_RS18390 yccF 3882130..3882576 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HYI45_RS18395 helD 3882699..3884753 (+) 2055 WP_012311774.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=465005 HYI45_RS18380 WP_000839153.1 3879366..3879995(+) (sxy/tfoX) [Escherichia coli strain M172-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=465005 HYI45_RS18380 WP_000839153.1 3879366..3879995(+) (sxy/tfoX) [Escherichia coli strain M172-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1