Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HZS88_RS05645 Genome accession   NZ_CP058709
Coordinates   1084562..1085191 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain S163-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079562..1090191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS88_RS05630 helD 1079804..1081858 (-) 2055 WP_001295354.1 DNA helicase IV -
  HZS88_RS05635 yccF 1081981..1082427 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HZS88_RS05640 yccS 1082437..1084599 (+) 2163 WP_000875061.1 YccS family putative transporter -
  HZS88_RS05645 sxy/tfoX 1084562..1085191 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HZS88_RS05650 sulA 1085410..1085919 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HZS88_RS05655 ompA 1086276..1087316 (+) 1041 WP_000750416.1 porin OmpA -
  HZS88_RS05660 matP 1087392..1087844 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HZS88_RS05665 ycbZ 1088030..1089790 (+) 1761 WP_097479646.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=464963 HZS88_RS05645 WP_000839153.1 1084562..1085191(-) (sxy/tfoX) [Escherichia coli strain S163-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=464963 HZS88_RS05645 WP_000839153.1 1084562..1085191(-) (sxy/tfoX) [Escherichia coli strain S163-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1