Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HWV51_RS09840 Genome accession   NZ_CP058671
Coordinates   1985396..1986001 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain MS114     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1980396..1991001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV51_RS09825 helD 1980613..1982667 (-) 2055 WP_000420502.1 DNA helicase IV -
  HWV51_RS09830 - 1982791..1983237 (+) 447 WP_001261222.1 YccF domain-containing protein -
  HWV51_RS09835 yccS 1983256..1985409 (+) 2154 WP_052894263.1 YccS family putative transporter -
  HWV51_RS09840 sxy/tfoX 1985396..1986001 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  HWV51_RS09845 sulA 1986218..1986727 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  HWV51_RS09850 ompA 1987084..1988142 (+) 1059 WP_001747676.1 porin OmpA -
  HWV51_RS09855 matP 1988214..1988666 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  HWV51_RS09860 - 1988852..1990612 (+) 1761 WP_000156446.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=464884 HWV51_RS09840 WP_001202375.1 1985396..1986001(-) (sxy/tfoX) [Salmonella enterica strain MS114]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=464884 HWV51_RS09840 WP_001202375.1 1985396..1986001(-) (sxy/tfoX) [Salmonella enterica strain MS114]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751