Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JQC68_RS07500 Genome accession   NZ_CP069308
Coordinates   1494141..1495691 (-) Length   516 a.a.
NCBI ID   WP_021116606.1    Uniprot ID   -
Organism   Glaesserella parasuis strain EHP1804     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1489141..1500691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS07480 (JQC68_07475) - 1489817..1491538 (+) 1722 WP_005712682.1 acetolactate synthase 3 large subunit -
  JQC68_RS07485 (JQC68_07480) ilvN 1491531..1492022 (+) 492 WP_005712683.1 acetolactate synthase small subunit -
  JQC68_RS07490 (JQC68_07485) - 1492129..1492950 (-) 822 WP_005712684.1 PHP domain-containing protein -
  JQC68_RS07495 (JQC68_07490) - 1493099..1494058 (-) 960 WP_203398968.1 SAM hydrolase/SAM-dependent halogenase family protein -
  JQC68_RS07500 (JQC68_07495) sbcB 1494141..1495691 (-) 1551 WP_021116606.1 exodeoxyribonuclease I Machinery gene
  JQC68_RS07505 (JQC68_07500) - 1495901..1496185 (-) 285 WP_010785923.1 type II toxin-antitoxin system RelE family toxin -
  JQC68_RS07510 (JQC68_07505) - 1496182..1496436 (-) 255 WP_021118772.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  JQC68_RS07515 (JQC68_07510) - 1496553..1497308 (-) 756 WP_021112098.1 ABC transporter permease -
  JQC68_RS07520 (JQC68_07515) - 1497330..1498226 (-) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  JQC68_RS07525 (JQC68_07520) dnaX 1498232..1500250 (-) 2019 WP_078208282.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58836.96 Da        Isoelectric Point: 5.3964

>NTDB_id=464742 JQC68_RS07500 WP_021116606.1 1494141..1495691(-) (sbcB) [Glaesserella parasuis strain EHP1804]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRQSCLENLKLLKSQKSLVREKVIDIFSEERNYPASNNIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRAEQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNPEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=464742 JQC68_RS07500 WP_021116606.1 1494141..1495691(-) (sbcB) [Glaesserella parasuis strain EHP1804]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTAATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACGCCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATCGATCGTCAATCCTGTTTAGAAAATTTAAAACTGCTAAAATCCCAAAAAAGCCTTGTGCGAGAAAAGGTTATTGA
TATTTTTTCTGAGGAAAGGAATTATCCAGCGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCGATTTTGCGAAATCTAAAACCTGAAGAGCTTGCACATCACGGCTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCGCAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGAAAAGATAAAATTATTGACAGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAGTCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-469)

Exonuclease (RNase_T)

(8-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512