Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JQC68_RS05210 Genome accession   NZ_CP069308
Coordinates   1008247..1011075 (-) Length   942 a.a.
NCBI ID   WP_203399298.1    Uniprot ID   -
Organism   Glaesserella parasuis strain EHP1804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003247..1016075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS05200 (JQC68_05195) - 1004284..1007706 (+) 3423 WP_203399297.1 ESPR-type extended signal peptide-containing protein -
  JQC68_RS05205 (JQC68_05200) - 1007783..1008163 (-) 381 WP_010786782.1 YacL family protein -
  JQC68_RS05210 (JQC68_05205) uvrA 1008247..1011075 (-) 2829 WP_203399298.1 excinuclease ABC subunit UvrA Machinery gene
  JQC68_RS05215 (JQC68_05210) ssb 1011378..1011875 (+) 498 WP_203399299.1 single-stranded DNA-binding protein Machinery gene
  JQC68_RS05220 (JQC68_05215) - 1012083..1013294 (+) 1212 WP_203399300.1 ATP-binding protein -
  JQC68_RS12285 - 1013356..1016064 (+) 2709 WP_043896222.1 ATP-dependent DNA helicase -

Sequence

Protein


Download         Length: 942 a.a.        Molecular weight: 104495.00 Da        Isoelectric Point: 6.6453

>NTDB_id=464735 JQC68_RS05210 WP_203399298.1 1008247..1011075(-) (uvrA) [Glaesserella parasuis strain EHP1804]
MQHIDIRGARTHNLKNVNLVLPRDKFIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTVTEIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLSPVVKDRKG
EHAKLLENLTANGYIRARIDGEICDLSDPPKLELQKKHTIEVVIDRFKVRSDIATRLAESFETALELSGSTAIIADMDDP
NAEELVFSSSFACSHCGYSLTELEPRLFSFNNPAGACPTCDGLGVQQYFDERKVVQNPDVSLASGAIKGWDRRSFYYFGL
LKSVAKHYDFDIEMPFNQLPKKIQNIILNGSKDEIEFVYVNDRGDSVKRVHTFEGVLNNMARRYKETESNAVREELAKYI
NNRVCTDCEGSRLRREARYVFLEKTNLPMVSEKSIGEALEFFEGLHLSGQKAQIAEKILKEIRERLSFLVNVGLNYLSLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAIMASDHIVDIG
PGAGVHGGQIIAQGTAQEIMQNEASITGKFLSGKEKIEIPKQRTPRDESKQLVLKGASGNNLKEVDLAIPIGLFTCITGV
SGSGKSTLINDTLFPIAQNALNRAENSDVAPYKSIDGLAYFDKVIDINQSPIGRTPRSNPATYTGLFTPIRELFAGTQEA
RARGYTVGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLDMTVEEAREFFD
AVPMIARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLAAELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHRLRDQ
GNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIAEGTPEEVAKDKKSHTARFLKEILKKG

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=464735 JQC68_RS05210 WP_203399298.1 1008247..1011075(-) (uvrA) [Glaesserella parasuis strain EHP1804]
ATGCAACATATTGATATTCGTGGGGCGAGAACCCACAATTTAAAAAACGTGAATTTGGTTCTTCCGAGAGATAAGTTTAT
TGTGATTACGGGGTTGTCAGGGTCAGGCAAATCGTCTTTGGCTTTTGATACCCTTTATGCTGAAGGGCAACGTCGTTATG
TGGAAAGTTTATCCGCTTATGCTCGCCAGTTCTTGTCTTTGATGGAAAAGCCTGATGTCGATCATATTGAAGGACTTTCC
CCTGCGATTTCAATTGAGCAGAAATCTACCTCGCACAATCCTCGTTCTACGGTGGGAACGGTGACGGAAATCCACGATTA
TTTGCGTTTGTTGTTTGCTCGTGTGGGCGAGCCTCGCTGTCCCGATCACGATGTGCCGTTAGCGGCTCAGACAATTTCGC
AAATGGTGGATAGAGTGCTGGAAGAACCTGAAGGTAAGCGTTTGATGTTGCTTTCTCCTGTGGTGAAAGATCGTAAAGGT
GAACACGCAAAATTATTAGAAAATCTGACCGCTAATGGCTATATCCGTGCCAGAATTGATGGGGAAATTTGTGATCTGTC
CGATCCGCCAAAACTTGAATTGCAGAAAAAACATACGATTGAAGTGGTGATTGATCGTTTTAAAGTGCGTAGCGATATTG
CGACCCGTTTAGCCGAGTCCTTTGAAACGGCATTGGAACTCTCCGGCTCAACGGCGATTATTGCCGATATGGACGATCCG
AATGCGGAAGAGTTAGTGTTTTCGTCAAGTTTTGCTTGCTCTCATTGTGGCTATTCGCTGACGGAACTAGAACCACGCCT
TTTCTCGTTTAATAATCCTGCTGGGGCTTGCCCAACTTGTGATGGTTTGGGAGTTCAGCAATATTTTGATGAACGTAAAG
TGGTGCAAAACCCTGATGTGTCTTTAGCAAGCGGTGCGATTAAGGGGTGGGATCGCCGTAGTTTCTACTATTTCGGTTTG
TTGAAATCGGTGGCTAAGCATTATGATTTTGATATTGAAATGCCGTTTAATCAGTTACCGAAGAAAATTCAAAACATCAT
TTTAAATGGTTCAAAAGATGAAATTGAATTTGTCTATGTGAATGATCGGGGTGATAGCGTTAAGCGAGTTCACACTTTTG
AAGGGGTGCTGAATAATATGGCTCGTCGGTATAAGGAAACCGAGTCAAATGCAGTGCGTGAAGAGCTGGCTAAATATATT
AATAATCGTGTTTGTACCGATTGTGAAGGCTCTCGTTTACGTCGTGAAGCCCGTTATGTCTTTTTAGAGAAAACCAACTT
GCCGATGGTGTCGGAAAAAAGTATCGGCGAAGCCTTAGAATTTTTTGAAGGCTTACATCTGTCTGGGCAGAAAGCACAAA
TTGCGGAAAAAATTCTCAAAGAGATCCGTGAGCGTTTGTCTTTCCTTGTCAATGTTGGGTTGAACTACCTTTCACTCTCT
CGTTCGGCAGAAACCTTATCAGGTGGTGAAGCTCAACGTATTCGCCTTGCCAGCCAAATCGGTGCAGGGTTAGTGGGAGT
GATGTACGTGCTTGATGAACCGTCTATTGGCTTGCACCAACGAGATAATGAACGTTTACTAAACACGCTTATTCATCTTC
GGAATTTGGGTAATACCGTGATTGTGGTTGAACACGATGAAGATGCGATTATGGCGTCGGATCATATTGTCGATATTGGA
CCAGGGGCAGGGGTACACGGTGGGCAGATTATTGCTCAGGGTACGGCTCAAGAAATTATGCAAAATGAAGCATCAATTAC
GGGCAAATTCTTATCGGGTAAGGAAAAAATCGAGATCCCGAAACAGCGTACCCCACGAGATGAAAGCAAACAGCTGGTGT
TAAAAGGGGCGAGCGGTAATAACTTGAAAGAAGTCGATTTAGCTATTCCTATCGGTCTGTTTACTTGTATTACGGGGGTA
TCGGGTTCGGGCAAATCCACCTTAATTAACGATACCTTATTCCCGATTGCTCAAAATGCGTTAAACCGTGCAGAAAACAG
CGATGTCGCCCCTTATAAGAGCATTGACGGATTGGCTTATTTCGACAAAGTGATCGACATCAATCAAAGCCCGATTGGAC
GTACGCCACGTTCAAACCCTGCGACTTATACAGGTTTATTTACCCCGATTCGTGAACTCTTTGCTGGTACACAAGAAGCA
AGAGCAAGGGGCTATACTGTCGGGCGTTTCAGCTTTAATGTGCGTGGCGGACGTTGTGAAGCCTGCCAAGGTGACGGGGT
GATCAAAGTTGAAATGCACTTCTTACCTGATGTATATGTGCCGTGCGACCACTGTAAAGGCAAACGCTATAACCGTGAAA
CCCTTGAAATTCGCTATAAAGGCAAAACCATTCATCAAGTGTTAGATATGACTGTGGAAGAAGCTCGTGAGTTTTTTGAT
GCCGTGCCTATGATTGCACGTAAGCTACAAACTTTAATAGACGTAGGCTTATCCTATATCCGTTTAGGGCAATCTTCTAC
CACCCTGTCAGGTGGCGAAGCTCAGCGGGTGAAACTGGCAGCGGAATTATCCAAACGTGACACGGGCAAAACCCTCTATA
TTCTTGATGAACCAACGACAGGATTACACTTCGCCGACATTAAACAATTATTGACCGTATTGCACCGCTTGCGTGATCAA
GGAAATACCATTGTGGTGATCGAGCATAACTTAGATGTGATCAAAACGGCAGACTGGATTGTCGATCTAGGTCCTGAAGG
CGGTAGCGGTGGCGGACAGATTATCGCCGAAGGTACGCCTGAAGAGGTGGCAAAAGATAAGAAATCCCATACGGCAAGAT
TTTTAAAAGAGATTTTGAAGAAAGGTTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.763

99.682

0.566
  uvrA Streptococcus pneumoniae TIGR4

56.763

99.682

0.566
  uvrA Streptococcus pneumoniae D39

56.763

99.682

0.566