Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HQ393_RS14880 | Genome accession | NZ_CP058627 |
| Coordinates | 3131591..3132760 (+) | Length | 389 a.a. |
| NCBI ID | WP_179356048.1 | Uniprot ID | A0A7H9BLF7 |
| Organism | Chitinibacter bivalviorum strain 2T18 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3126591..3137760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQ393_RS14855 (HQ393_14855) | - | 3127134..3127589 (+) | 456 | WP_179356040.1 | hypothetical protein | - |
| HQ393_RS14860 (HQ393_14860) | ahcY | 3127869..3129296 (+) | 1428 | WP_218871201.1 | adenosylhomocysteinase | - |
| HQ393_RS14865 (HQ393_14865) | - | 3129405..3130475 (-) | 1071 | WP_179356041.1 | lipopolysaccharide assembly protein LapB | - |
| HQ393_RS14870 (HQ393_14870) | - | 3130613..3130864 (-) | 252 | WP_179356044.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| HQ393_RS14875 (HQ393_14875) | rsmD | 3130940..3131524 (-) | 585 | WP_179356046.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| HQ393_RS14880 (HQ393_14880) | pilA | 3131591..3132760 (+) | 1170 | WP_179356048.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| HQ393_RS14885 (HQ393_14885) | - | 3132779..3133357 (+) | 579 | WP_179356049.1 | GNAT family N-acetyltransferase | - |
| HQ393_RS14890 (HQ393_14890) | ftsE | 3133332..3133985 (+) | 654 | WP_179356050.1 | cell division ATP-binding protein FtsE | - |
| HQ393_RS14895 (HQ393_14895) | ftsX | 3133996..3134898 (+) | 903 | WP_179356051.1 | permease-like cell division protein FtsX | - |
| HQ393_RS14900 (HQ393_14900) | - | 3134956..3135948 (+) | 993 | WP_179356052.1 | glycosyltransferase | - |
| HQ393_RS14905 (HQ393_14905) | rpoH | 3136221..3137078 (+) | 858 | WP_179356053.1 | RNA polymerase sigma factor RpoH | - |
| HQ393_RS14910 (HQ393_14910) | - | 3137214..3137540 (+) | 327 | WP_179356054.1 | hypothetical protein | - |
| HQ393_RS14915 (HQ393_14915) | - | 3137548..3137715 (-) | 168 | WP_179356056.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 389 a.a. Molecular weight: 41613.92 Da Isoelectric Point: 5.5180
>NTDB_id=464688 HQ393_RS14880 WP_179356048.1 3131591..3132760(+) (pilA) [Chitinibacter bivalviorum strain 2T18]
MFSFFKKKKPADTIAEQDLAPAQPEAAPEITPVAADVVTETIAPSAPVQASIAEVLPVTQELAKPVEQYIENDPAKLGNI
DQPQERPKLSWADRLKLGLAKTRDKLGKSLAGVFGGGKIDDDLYEELETVLLTADMGVDATQHLLKDVRERVSLKGLKDP
HELKGALKDSLVELIQPLQIPLNVEGHKPFILMVAGVNGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLVVWG
ERNGVHVIAQESGDAAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVVQKADPTGPHEIMLVLDANTGQ
NALAQTKSFDDALGLTGLVLTKLDGTAKGGVIAAIAKNRPVPLRFIGVGETIDDLRPFVAKDYIDALFE
MFSFFKKKKPADTIAEQDLAPAQPEAAPEITPVAADVVTETIAPSAPVQASIAEVLPVTQELAKPVEQYIENDPAKLGNI
DQPQERPKLSWADRLKLGLAKTRDKLGKSLAGVFGGGKIDDDLYEELETVLLTADMGVDATQHLLKDVRERVSLKGLKDP
HELKGALKDSLVELIQPLQIPLNVEGHKPFILMVAGVNGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLVVWG
ERNGVHVIAQESGDAAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVVQKADPTGPHEIMLVLDANTGQ
NALAQTKSFDDALGLTGLVLTKLDGTAKGGVIAAIAKNRPVPLRFIGVGETIDDLRPFVAKDYIDALFE
Nucleotide
Download Length: 1170 bp
>NTDB_id=464688 HQ393_RS14880 WP_179356048.1 3131591..3132760(+) (pilA) [Chitinibacter bivalviorum strain 2T18]
ATGTTTAGTTTTTTCAAAAAAAAGAAGCCCGCTGACACCATCGCGGAGCAGGATTTAGCCCCCGCGCAGCCAGAAGCTGC
GCCAGAAATAACGCCCGTAGCGGCTGACGTCGTGACTGAAACGATTGCACCGAGTGCGCCTGTGCAAGCATCTATTGCCG
AGGTATTGCCAGTAACTCAAGAATTGGCAAAGCCTGTAGAGCAATACATCGAGAATGATCCAGCCAAATTGGGCAATATC
GATCAGCCGCAAGAGCGGCCAAAACTCTCTTGGGCAGATCGCCTGAAGCTGGGCTTGGCCAAAACGCGCGATAAGTTGGG
TAAAAGTTTGGCCGGCGTGTTTGGTGGCGGCAAAATCGACGATGATCTGTATGAAGAACTCGAAACGGTCTTGCTGACTG
CCGATATGGGCGTCGATGCGACACAGCATTTATTAAAAGATGTGCGCGAACGCGTCTCACTGAAAGGCCTGAAAGATCCG
CATGAATTGAAAGGCGCGCTGAAAGACAGCTTGGTTGAGTTGATTCAGCCATTGCAAATCCCGCTCAATGTTGAAGGCCA
CAAGCCGTTTATTTTGATGGTGGCGGGCGTGAATGGCGCGGGTAAAACCACGTCGATTGGTAAATTGGCCAAATACTTCC
AAAGCCAAGGCAAGAGCGTGTTGCTGGCGGCCGGCGATACGTTTCGCGCGGCTGCGCGCGAGCAGCTGGTTGTCTGGGGC
GAGCGCAATGGCGTGCATGTGATTGCGCAGGAATCGGGCGACGCAGCAGCGGTGGCGTTTGACGCGGTGAATGCCGCCAA
AGCGCGCGGTATTGATGTGGTGATTGTCGATACTGCGGGTCGTTTGCCAACGCAATTGCACTTGATGGAAGAAATCAAAA
AAGTAAAACGCGTGGTGCAAAAAGCCGACCCGACTGGCCCACACGAAATTATGCTGGTGCTCGATGCCAACACTGGGCAA
AACGCCTTGGCGCAAACCAAATCATTCGACGATGCACTGGGTTTGACCGGCTTGGTGCTGACGAAGCTCGACGGTACAGC
CAAAGGTGGCGTGATTGCTGCCATTGCCAAAAATCGCCCAGTGCCGCTACGCTTTATCGGCGTGGGTGAAACGATCGATG
ATCTACGCCCATTTGTGGCCAAGGATTATATCGACGCGCTGTTTGAATAA
ATGTTTAGTTTTTTCAAAAAAAAGAAGCCCGCTGACACCATCGCGGAGCAGGATTTAGCCCCCGCGCAGCCAGAAGCTGC
GCCAGAAATAACGCCCGTAGCGGCTGACGTCGTGACTGAAACGATTGCACCGAGTGCGCCTGTGCAAGCATCTATTGCCG
AGGTATTGCCAGTAACTCAAGAATTGGCAAAGCCTGTAGAGCAATACATCGAGAATGATCCAGCCAAATTGGGCAATATC
GATCAGCCGCAAGAGCGGCCAAAACTCTCTTGGGCAGATCGCCTGAAGCTGGGCTTGGCCAAAACGCGCGATAAGTTGGG
TAAAAGTTTGGCCGGCGTGTTTGGTGGCGGCAAAATCGACGATGATCTGTATGAAGAACTCGAAACGGTCTTGCTGACTG
CCGATATGGGCGTCGATGCGACACAGCATTTATTAAAAGATGTGCGCGAACGCGTCTCACTGAAAGGCCTGAAAGATCCG
CATGAATTGAAAGGCGCGCTGAAAGACAGCTTGGTTGAGTTGATTCAGCCATTGCAAATCCCGCTCAATGTTGAAGGCCA
CAAGCCGTTTATTTTGATGGTGGCGGGCGTGAATGGCGCGGGTAAAACCACGTCGATTGGTAAATTGGCCAAATACTTCC
AAAGCCAAGGCAAGAGCGTGTTGCTGGCGGCCGGCGATACGTTTCGCGCGGCTGCGCGCGAGCAGCTGGTTGTCTGGGGC
GAGCGCAATGGCGTGCATGTGATTGCGCAGGAATCGGGCGACGCAGCAGCGGTGGCGTTTGACGCGGTGAATGCCGCCAA
AGCGCGCGGTATTGATGTGGTGATTGTCGATACTGCGGGTCGTTTGCCAACGCAATTGCACTTGATGGAAGAAATCAAAA
AAGTAAAACGCGTGGTGCAAAAAGCCGACCCGACTGGCCCACACGAAATTATGCTGGTGCTCGATGCCAACACTGGGCAA
AACGCCTTGGCGCAAACCAAATCATTCGACGATGCACTGGGTTTGACCGGCTTGGTGCTGACGAAGCTCGACGGTACAGC
CAAAGGTGGCGTGATTGCTGCCATTGCCAAAAATCGCCCAGTGCCGCTACGCTTTATCGGCGTGGGTGAAACGATCGATG
ATCTACGCCCATTTGTGGCCAAGGATTATATCGACGCGCTGTTTGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
60.192 |
100 |
0.645 |