Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HQ393_RS01585 Genome accession   NZ_CP058627
Coordinates   347791..349179 (+) Length   462 a.a.
NCBI ID   WP_179357123.1    Uniprot ID   A0A7H9BEQ4
Organism   Chitinibacter bivalviorum strain 2T18     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342791..354179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ393_RS01560 (HQ393_01560) - 344443..345408 (+) 966 WP_179357118.1 KpsF/GutQ family sugar-phosphate isomerase -
  HQ393_RS01565 (HQ393_01565) kdsC 345477..345992 (+) 516 WP_179357119.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HQ393_RS01570 (HQ393_01570) lptC 346002..346604 (+) 603 WP_179357120.1 LPS export ABC transporter periplasmic protein LptC -
  HQ393_RS01575 (HQ393_01575) lptA 346555..347049 (+) 495 WP_179357121.1 lipopolysaccharide transport periplasmic protein LptA -
  HQ393_RS01580 (HQ393_01580) lptB 347046..347768 (+) 723 WP_179357122.1 LPS export ABC transporter ATP-binding protein -
  HQ393_RS01585 (HQ393_01585) rpoN/rpoN1 347791..349179 (+) 1389 WP_179357123.1 RNA polymerase factor sigma-54 Machinery gene
  HQ393_RS01590 (HQ393_01590) raiA 349207..349533 (+) 327 WP_179357124.1 ribosome-associated translation inhibitor RaiA -
  HQ393_RS01595 (HQ393_01595) - 349638..350111 (+) 474 WP_179357125.1 PTS sugar transporter subunit IIA -
  HQ393_RS01600 (HQ393_01600) hprK 350191..351135 (+) 945 WP_179357126.1 HPr(Ser) kinase/phosphatase -
  HQ393_RS01605 (HQ393_01605) rapZ 351135..351995 (+) 861 WP_179357127.1 RNase adapter RapZ -
  HQ393_RS01610 (HQ393_01610) - 351985..352368 (+) 384 WP_179357128.1 NusG domain II-containing protein -
  HQ393_RS01615 (HQ393_01615) - 352349..352912 (+) 564 WP_179357129.1 Gx transporter family protein -
  HQ393_RS01620 (HQ393_01620) - 352909..353514 (+) 606 WP_179357130.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 52023.18 Da        Isoelectric Point: 4.5925

>NTDB_id=464667 HQ393_RS01585 WP_179357123.1 347791..349179(+) (rpoN/rpoN1) [Chitinibacter bivalviorum strain 2T18]
MKQSLQLRMSQQLNLTPQLQQSIKLLQLSTLEFNQELDQYLADNPLLERDEPEGDAGEVIESVTESNDTASEELDGLRWD
DVKSGASFDDDDEHDPTLRVPIELSLRDHLLAQARLLGISERDHALLSLLIEALDEDGLLTQSLEEIFEQLPADLIADLE
LEPEELLTAHQYLMQLEPLGVGARTLSECLLLQLKVYPESEVLNLAKRLIESSLELLALRDYTKLKKLLHCDEEQLRQAQ
QLIRTLNPRPAANWGGETTRYVVPDVLVQKLRGRWTVKLNQAAQPKLKVNEIYAKLLQGDAGDSLAGQLQEARWLIKSIE
QRGSTILRVAQAIVARQQAFFEYGEVAMKPLVLRDIAEELDLHESTISRVTTQKFMLTPRGVLEYKYFFGSHVENESGGE
NSATSIKALIKQLVQQENPKKPLSDSAITEELARQGVAVARRTVAKYREALNIAPASQRKSL

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=464667 HQ393_RS01585 WP_179357123.1 347791..349179(+) (rpoN/rpoN1) [Chitinibacter bivalviorum strain 2T18]
ATGAAGCAATCCCTGCAGCTGCGCATGTCGCAGCAGCTCAATTTAACGCCCCAATTACAGCAGTCGATTAAGCTGCTGCA
ACTCTCCACGCTTGAATTTAATCAGGAATTAGATCAGTACTTAGCCGACAATCCATTACTCGAGCGTGACGAGCCTGAGG
GCGATGCGGGCGAAGTGATCGAGTCTGTTACCGAGTCCAATGATACCGCTTCCGAAGAACTGGATGGATTGCGCTGGGAC
GATGTAAAAAGCGGCGCATCATTTGATGATGATGACGAGCATGACCCTACGCTGCGAGTGCCCATCGAGCTATCGTTGCG
CGATCATCTGCTGGCCCAGGCTCGCCTGCTGGGTATTAGCGAGCGCGACCATGCCTTGCTTTCGCTTTTAATCGAGGCAC
TTGATGAAGACGGTTTACTGACCCAAAGCTTGGAAGAAATTTTCGAGCAACTACCTGCCGATTTAATTGCCGATTTGGAA
TTGGAACCCGAGGAGTTACTCACTGCACATCAGTATTTAATGCAGTTAGAACCATTAGGTGTCGGAGCTCGAACGCTTTC
GGAATGCTTATTGCTTCAGCTCAAGGTTTACCCTGAGTCAGAGGTGCTAAATTTAGCTAAACGCTTGATTGAATCTAGTC
TTGAATTGCTGGCGCTACGCGATTACACCAAGCTCAAAAAGTTATTGCATTGTGACGAAGAGCAATTACGTCAGGCGCAG
CAATTGATACGGACACTCAATCCACGTCCCGCCGCCAATTGGGGGGGCGAAACGACCCGTTATGTCGTGCCTGATGTGTT
AGTGCAAAAATTACGTGGTCGTTGGACTGTGAAATTGAATCAGGCGGCCCAACCTAAATTAAAAGTCAATGAAATCTACG
CCAAATTGTTGCAAGGGGATGCTGGTGATAGTTTGGCTGGGCAATTGCAAGAAGCTAGGTGGTTGATTAAAAGCATAGAA
CAGCGGGGTAGTACGATTTTACGAGTGGCTCAAGCCATTGTCGCGCGGCAGCAAGCATTTTTTGAATATGGTGAAGTGGC
GATGAAGCCACTCGTGTTACGCGACATTGCTGAAGAACTAGATTTACATGAGTCGACAATTTCACGTGTGACAACGCAAA
AATTTATGCTGACACCACGTGGGGTTTTGGAGTACAAATACTTCTTCGGCAGTCATGTTGAAAACGAAAGTGGTGGTGAA
AACTCGGCCACTTCGATCAAAGCTTTGATCAAACAACTGGTGCAGCAAGAAAATCCGAAGAAACCATTATCGGATAGTGC
TATAACAGAAGAACTCGCAAGGCAAGGTGTCGCAGTAGCGCGGCGCACCGTGGCCAAGTATCGGGAGGCGTTAAATATAG
CGCCTGCCAGTCAGCGCAAAAGCCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(104-293)

Sigma-54, DNA binding domain (Sigma54_DBD)

(306-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9BEQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.718

100

0.535