Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LeuG3613_RS07250 Genome accession   NZ_CP058617
Coordinates   1413585..1415372 (+) Length   595 a.a.
NCBI ID   WP_097001857.1    Uniprot ID   -
Organism   Leuconostoc gasicomitatum strain CBA3613     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408585..1420372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LeuG3613_RS07230 (LeuG3613_07230) - 1408744..1410147 (+) 1404 WP_414973922.1 ABC transporter substrate-binding protein/permease -
  LeuG3613_RS07235 (LeuG3613_07235) - 1410147..1410899 (+) 753 WP_041771847.1 amino acid ABC transporter ATP-binding protein -
  LeuG3613_RS07240 (LeuG3613_07240) - 1410977..1412410 (+) 1434 WP_090091381.1 ABC transporter substrate-binding protein/permease -
  LeuG3613_RS07245 (LeuG3613_07245) - 1412460..1413488 (+) 1029 WP_097001858.1 competence protein CoiA -
  LeuG3613_RS07250 (LeuG3613_07250) pepF 1413585..1415372 (+) 1788 WP_097001857.1 oligoendopeptidase F Regulator
  LeuG3613_RS07255 (LeuG3613_07255) - 1415486..1415881 (+) 396 WP_331773693.1 cytidine deaminase -
  LeuG3613_RS07260 (LeuG3613_07260) - 1415927..1416844 (+) 918 WP_097001855.1 phosphoglycerate dehydrogenase -
  LeuG3613_RS07265 (LeuG3613_07265) - 1416914..1417882 (-) 969 WP_010383002.1 LacI family DNA-binding transcriptional regulator -
  LeuG3613_RS07270 (LeuG3613_07270) - 1418076..1419092 (+) 1017 WP_097001854.1 zinc-dependent alcohol dehydrogenase family protein -
  LeuG3613_RS07275 (LeuG3613_07275) - 1419097..1419831 (+) 735 WP_013231839.1 hypothetical protein -
  LeuG3613_RS07280 (LeuG3613_07280) - 1419894..1420277 (+) 384 WP_090091345.1 VOC family protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67604.35 Da        Isoelectric Point: 4.5010

>NTDB_id=464630 LeuG3613_RS07250 WP_097001857.1 1413585..1415372(+) (pepF) [Leuconostoc gasicomitatum strain CBA3613]
MAQLLRNEVPEDLTWDLSTIFDSDNDWELAFAAVKQEAEMLSRFVGHVGDSAALLQSALEADLKIERDLEKVYVYAHQIY
DQDTTNQSYAAFNSRVQALWAEVSQATAYFQPEVLNIPDDKLAAYLMTDGLQQYAHLFETLRALKPHTLDAEQEKLLAGV
GDIFNASENTFGALDNSDITFGDVHTESGETVALTNGLYSLLLESKSRDLRREAFETLYDSYIGLQNTFASTLSSHIKGH
NFLAKVRHYNSAREAAILPHNVPTTVFDTLSQTVTANLPLLHRFVSLRKRILGVTDVHSYDLYVPLVDEVDFDVTYEKAQ
EIVLAALAPLGQDYLEIVKKAFDERWIDVVENKGKRSGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRH
NQDYHYGDYPIFLAEIASTTNESLLTNYLLKTNSDPKFQAYVLNQYLDGFKGTVFRQTQFAEFENWIHEQSAAGVALTAD
QMSTYYSELNQKYYGPDLFPDEEIAYEWTRIPHFYYNYYVYQYATGEAAATTLAERIIKNDGAEDYKAYLKAGSSDYPLN
VILKAGVDMSQADYLKQAFNVFETRLNQLESLLIK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=464630 LeuG3613_RS07250 WP_097001857.1 1413585..1415372(+) (pepF) [Leuconostoc gasicomitatum strain CBA3613]
ATGGCACAACTATTACGCAATGAAGTACCTGAAGATCTTACGTGGGATCTGTCTACAATTTTTGATTCTGATAATGATTG
GGAACTCGCTTTTGCTGCTGTTAAACAGGAAGCGGAAATGTTGAGTCGTTTTGTTGGACATGTTGGCGATTCAGCTGCAT
TGTTACAGTCTGCTTTAGAGGCAGATTTGAAAATAGAACGGGACTTGGAAAAAGTGTATGTATATGCACATCAAATTTAT
GATCAAGACACAACAAATCAGTCGTATGCGGCTTTCAATTCACGCGTACAAGCACTTTGGGCTGAAGTAAGTCAAGCAAC
AGCCTATTTTCAACCAGAAGTTTTAAACATACCAGATGATAAATTGGCAGCTTACTTAATGACTGATGGTTTACAACAGT
ATGCACATTTATTTGAAACATTGCGTGCTTTAAAGCCACACACGTTAGATGCGGAACAAGAAAAATTATTAGCTGGTGTA
GGTGATATTTTTAATGCATCAGAGAACACATTTGGTGCGCTTGACAATTCAGATATAACTTTTGGGGATGTACATACGGA
ATCTGGTGAGACTGTAGCCTTGACCAATGGGCTATATAGTTTGTTACTGGAATCAAAGTCACGAGATTTACGCCGTGAAG
CATTTGAAACATTATATGACAGTTACATCGGTTTGCAAAACACATTTGCTTCAACTTTATCATCTCACATTAAAGGACAT
AACTTTTTAGCTAAAGTGCGACATTATAATTCAGCGCGCGAAGCAGCTATCTTGCCACACAACGTCCCAACGACTGTTTT
TGATACGCTAAGTCAGACGGTAACGGCTAATTTACCATTGTTACATCGCTTTGTATCATTGCGTAAAAGAATTTTAGGCG
TAACAGATGTGCATAGTTATGATTTGTATGTGCCATTGGTGGATGAAGTTGATTTTGATGTGACATATGAAAAGGCACAA
GAAATTGTGTTAGCTGCGTTAGCACCATTAGGTCAAGATTATCTTGAGATTGTCAAAAAAGCATTTGACGAACGCTGGAT
TGATGTTGTTGAAAACAAAGGGAAACGTTCAGGAGCATATTCGAGTGGTACTTATGATACAAATCCTTTTATTTTGTTAA
ACTGGCAAAATAATTTGAACAATGTTTATACACTGGCTCATGAAATGGGTCATTCTGTTCATTCTTATTTAACACGACAT
AATCAGGACTATCATTATGGTGATTATCCAATTTTCTTAGCAGAGATTGCTTCGACAACTAATGAAAGTTTACTAACAAA
TTATTTACTAAAAACAAATAGTGATCCTAAATTCCAAGCGTATGTTTTGAATCAATATCTCGATGGTTTTAAAGGGACTG
TCTTTCGTCAGACGCAGTTTGCGGAATTTGAAAATTGGATTCATGAGCAAAGTGCAGCGGGTGTCGCTTTGACTGCTGAC
CAAATGAGCACATATTATAGTGAACTTAACCAAAAATATTATGGACCAGATTTGTTTCCGGATGAAGAAATTGCATATGA
ATGGACACGAATCCCACATTTTTATTATAATTACTATGTTTACCAATACGCAACAGGTGAAGCGGCAGCAACCACATTAG
CAGAACGTATCATTAAAAATGATGGCGCAGAAGATTATAAGGCGTACTTAAAAGCTGGTTCATCAGACTATCCGTTGAAT
GTGATTTTGAAAGCTGGCGTGGATATGAGTCAAGCAGATTATTTAAAGCAGGCATTCAATGTGTTTGAGACACGATTGAA
TCAATTGGAATCATTATTAATCAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.614

99.664

0.524