Detailed information NTG0464583

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JNO62_RS10690
• Genome accession: NZ_CP069245
• Coordinates: 2365542..2366675 (-)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain PeaFJ1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2360542..2371675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNO62_RS10670 (JNO62_10590)	ndk	2361552..2361977 (-)	426	WP_011001161.1	nucleoside-diphosphate kinase	-
JNO62_RS10675 (JNO62_10595)	-	2362346..2363047 (+)	702	WP_011001160.1	Bax inhibitor-1/YccA family protein	-
JNO62_RS10680 (JNO62_10600)	rlmD	2363132..2364484 (-)	1353	WP_071011295.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
JNO62_RS10685 (JNO62_10605)	-	2364639..2365508 (+)	870	WP_071011298.1	endonuclease/exonuclease/phosphatase family protein	-
JNO62_RS10690 (JNO62_10610)	rpoS	2365542..2366675 (-)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
JNO62_RS10695 (JNO62_10615)	-	2366684..2367511 (-)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
JNO62_RS10700 (JNO62_10620)	-	2367513..2368478 (-)	966	WP_071011302.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JNO62_RS10705 (JNO62_10625)	surE	2368494..2369249 (-)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
JNO62_RS10710 (JNO62_10630)	-	2369441..2370415 (+)	975	WP_011001153.1	NADPH:quinone oxidoreductase family protein	-
JNO62_RS10715 (JNO62_10635)	-	2370493..2371599 (-)	1107	WP_019718025.1	alkene reductase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=464583 JNO62_RS10690 WP_011001157.1 2365542..2366675(-) (rpoS) [Ralstonia pseudosolanacearum strain PeaFJ1]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=464583 JNO62_RS10690 WP_011001157.1 2365542..2366675(-) (rpoS) [Ralstonia pseudosolanacearum strain PeaFJ1]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCCGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAACTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACGACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCTGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374