Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JNO62_RS09595 Genome accession   NZ_CP069245
Coordinates   2120963..2122333 (-) Length   456 a.a.
NCBI ID   WP_016722028.1    Uniprot ID   A0ABX7ZUJ9
Organism   Ralstonia pseudosolanacearum strain PeaFJ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2115963..2127333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO62_RS09575 (JNO62_09495) - 2116801..2118738 (+) 1938 WP_111375151.1 ATP-binding cassette domain-containing protein -
  JNO62_RS09580 (JNO62_09500) - 2118770..2119876 (+) 1107 WP_111375147.1 CaiB/BaiF CoA transferase family protein -
  JNO62_RS09585 (JNO62_09505) - 2119859..2120380 (-) 522 WP_020831906.1 DUF523 domain-containing protein -
  JNO62_RS09590 (JNO62_09510) - 2120390..2120869 (-) 480 WP_011001322.1 disulfide bond formation protein B -
  JNO62_RS09595 (JNO62_09515) radA/sms 2120963..2122333 (-) 1371 WP_016722028.1 DNA repair protein RadA Machinery gene
  JNO62_RS09600 (JNO62_09520) alr 2122413..2123540 (-) 1128 WP_020831897.1 alanine racemase -
  JNO62_RS09605 (JNO62_09525) lplT 2124171..2125487 (+) 1317 WP_011001319.1 lysophospholipid transporter LplT -
  JNO62_RS09610 (JNO62_09530) - 2125609..2126505 (-) 897 WP_249902456.1 uracil-DNA glycosylase -
  JNO62_RS09615 (JNO62_09535) rimI 2126576..2127109 (-) 534 WP_011001317.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48397.86 Da        Isoelectric Point: 7.6668

>NTDB_id=464579 JNO62_RS09595 WP_016722028.1 2120963..2122333(-) (radA/sms) [Ralstonia pseudosolanacearum strain PeaFJ1]
MAKSKTVYTCTECGGTSPKWAGQCPHCQQWNTLVETVAQPVSGAGARFQSLAASAVVRKLADIDAVDVPRFSSGIDEFDR
VLGGGLVGGGVVLIGGDPGIGKSTLLLQALSNLAASRRVLYVSGEESGAQIALRARRLGVESPNLALLAEIQLERIQATI
EAEKPEVVVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKRLDVTTILVGHVTKEGALAGPRVLEHIVDTVLYFEGD
THSAYRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQTVPGSCVLVTQEGTRPLLVEIQALVDAAGVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPRGLVVFGEIGLAGEI
RPTPRGQERLKEAAKLGFSIAVIPKSNAPKQPIDGLQVIAVERIEQAIDRVRGLEA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=464579 JNO62_RS09595 WP_016722028.1 2120963..2122333(-) (radA/sms) [Ralstonia pseudosolanacearum strain PeaFJ1]
TTGGCCAAGAGCAAGACGGTCTATACGTGCACCGAGTGCGGCGGCACGTCGCCGAAATGGGCGGGGCAGTGCCCGCATTG
CCAGCAGTGGAACACGCTGGTGGAAACCGTGGCGCAGCCGGTGTCCGGCGCCGGCGCGCGCTTCCAGTCGCTGGCGGCGA
GCGCCGTGGTGCGCAAGCTGGCGGACATCGACGCCGTGGACGTGCCGCGCTTCTCCAGCGGCATCGACGAATTCGACCGC
GTGCTGGGCGGCGGCCTGGTCGGCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCT
GCAGGCGCTGTCCAACCTGGCGGCCAGCCGGCGCGTGCTGTATGTGAGCGGCGAGGAGTCCGGCGCGCAGATCGCGCTGC
GGGCGCGGCGCCTGGGCGTCGAAAGCCCGAACCTGGCGCTGCTGGCCGAGATCCAGCTCGAGCGCATCCAGGCCACCATC
GAGGCGGAGAAGCCCGAGGTGGTCGTCATCGACTCCATCCAGACGCTGTACTCGGAGGCGCTGACCTCGGCGCCGGGCTC
GGTGGCCCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCCAAGCGGCTGGACGTGACCACCATCCTGGTCGGCC
ACGTGACCAAGGAGGGCGCACTGGCGGGCCCGCGCGTGCTGGAGCACATCGTCGATACGGTGCTGTATTTCGAGGGCGAC
ACGCATTCGGCCTACCGGCTGGTACGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCCATGAC
CGAGCGCGGCCTGCGTGGCGTGGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGACCGTGCCGGGCTCGTGCG
TGCTGGTGACGCAGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGATGCGGCGGGCGTGCCGAACCCG
CGGCGGCTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCATTGCCTG
CTTTGACCAGGACGTGTTCCTCAATGCCGTGGGCGGGGTCAAAATCACCGAGCCGGCGGCGGACCTGGCGGTGCTGCTGG
CGATCCATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTTTTCGGCGAGATCGGGCTGGCCGGCGAGATC
CGTCCGACGCCGCGCGGGCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGTTTCTCGATTGCCGTGATCCCCAAGTCGAA
CGCGCCCAAGCAGCCGATCGACGGCCTGCAGGTGATCGCCGTCGAGCGCATCGAGCAGGCGATCGACCGGGTGCGCGGGC
TGGAGGCTTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(362-448)

AAA domain (AAA_25)

(65-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.93

100

0.469
  radA Streptococcus pneumoniae D39

46.93

100

0.469
  radA Streptococcus pneumoniae R6

46.93

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.469
  radA Streptococcus mitis SK321

47.124

99.123

0.467
  radA Streptococcus mitis NCTC 12261

46.903

99.123

0.465