Detailed information NTG0464554

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: JNO62_RS01295
• Genome accession: NZ_CP069245
• Coordinates: 287846..289315 (+)
• Length: 489 a.a.
• NCBI ID: WP_016724407.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain PeaFJ1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 282846..294315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNO62_RS01280 (JNO62_01280)	-	284000..285520 (+)	1521	WP_016724410.1	aldehyde dehydrogenase family protein	-
JNO62_RS01285 (JNO62_01285)	-	285604..286998 (+)	1395	WP_020832943.1	ethanolamine ammonia-lyase subunit EutB	-
JNO62_RS01290 (JNO62_01290)	eutC	287007..287819 (+)	813	WP_086005437.1	ethanolamine ammonia-lyase subunit EutC	-
JNO62_RS01295 (JNO62_01295)	sbcB	287846..289315 (+)	1470	WP_016724407.1	exodeoxyribonuclease I	Machinery gene
JNO62_RS01300 (JNO62_01300)	-	289417..289911 (+)	495	WP_111374686.1	type VI secretion system amidase effector protein Tae4	-
JNO62_RS01305 (JNO62_01305)	-	289908..290327 (+)	420	WP_021154961.1	type VI secretion system amidase immunity protein Tai4	-
JNO62_RS01310 (JNO62_01310)	-	290580..294143 (-)	3564	WP_111374687.1	indolepyruvate ferredoxin oxidoreductase family protein	-

Sequence

Protein

• Length: 489 a.a.
• Molecular weight: 55710.72 Da
• Isoelectric Point: 4.9918

>NTDB_id=464554 JNO62_RS01295 WP_016724407.1 287846..289315(+) (sbcB) [Ralstonia pseudosolanacearum strain PeaFJ1]
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC
RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDASRPLLHVSGM
YGVERGCLAVVWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKSPIVIGNLK
TLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLFRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALY
DYAEMVTPE

Nucleotide

• Length: 1470 bp

>NTDB_id=464554 JNO62_RS01295 WP_016724407.1 287846..289315(+) (sbcB) [Ralstonia pseudosolanacearum strain PeaFJ1]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGACGCCGAGCTCAACGAGATCGGCGAACCGGTCG
AGCTGTTCTGCCAGCCGTCCAACGACTGGCTGCCCGACCCGGTGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CGCCGGCAGGGTATCCCCGAGCACCGTTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTATAACTCCATCCGCTTCGACGATGAGATCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGATGGGATCTGCTCGATGTGGTGCGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGGCGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCACA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCGCCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGCGACGCGTCGCGGCCGTTGCTGCACGTCTCGGGCATG
TACGGCGTGGAGCGGGGCTGCCTGGCGGTAGTGTGGCCGCTGGGCTGGCACCCGACCAACAAGAACGAACTGCTGGTGTG
GGACCTCGCCTGCGATCCGGCCGAGCTGTTCGACCTCGGCGTTGACACCATCCGCGAGCGCCTGTTCACGCGCAGCGCCG
ATCTGACCGAGGGCACCACGCGCTTGCCCATCAAGTCGATCCACATCAACAAGTCGCCCATCGTCATCGGCAACCTGAAG
ACGCTGCAGCCCGCGCAGGCCGAGCGCTGGGGCATCGACTTCGCGGTCATCGAGCGTCATGCCGGTATCGCCCAAGGGGC
GCCCGATCTGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAGCTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAATGACGACCGCCGCACGCTCAACGAACTGCGCACGCTTTCGGGCGAGCAGCTCGCGCAGCTGCAC
CCCGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTCCGCTACCGCGCCCGCAATTTCCCCGACACGCTCACGGAAGA
CGAGCACGAGCAGTGGGAACAGCTGCGCGCCGAGCGTCTCTTCGAAGGCCGCGATGGCTACCTGACGCTGGATGCCTATG
CCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGGATAAAGGCGATGCGCGTGCCGAAGGCATCCTCTCGGCGCTGTAC
GACTACGCTGAGATGGTGACGCCGGAGTAG

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (19-199)

• Exonuclease C-terminal (ExoI_SH3) (218-484)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	47.257	96.933	0.458