Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CNCMI4319_RS00830 Genome accession   NZ_CP058603
Coordinates   203986..205869 (+) Length   627 a.a.
NCBI ID   WP_013362999.1    Uniprot ID   -
Organism   Bifidobacterium bifidum strain CNCM I-4319     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 198986..210869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNCMI4319_RS00805 (CNCMI4319_0158) - 200141..200311 (-) 171 Protein_156 glycerophosphodiester phosphodiesterase -
  CNCMI4319_RS00810 (CNCMI4319_0159) - 200300..201130 (+) 831 WP_117653809.1 DUF5011 domain-containing protein -
  CNCMI4319_RS00815 (CNCMI4319_0160) - 201366..202358 (+) 993 WP_017143196.1 aldo/keto reductase -
  CNCMI4319_RS00820 - 202746..203033 (-) 288 WP_151909852.1 DUF1778 domain-containing protein -
  CNCMI4319_RS00825 (CNCMI4319_0161) - 203237..203767 (+) 531 WP_003817581.1 MarR family winged helix-turn-helix transcriptional regulator -
  CNCMI4319_RS00830 (CNCMI4319_0162) rcrP 203986..205869 (+) 1884 WP_013362999.1 ABC transporter ATP-binding protein Regulator
  CNCMI4319_RS09660 (CNCMI4319_0163) rcrQ 205920..207860 (+) 1941 WP_210153465.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68062.77 Da        Isoelectric Point: 6.0532

>NTDB_id=464529 CNCMI4319_RS00830 WP_013362999.1 203986..205869(+) (rcrP) [Bifidobacterium bifidum strain CNCM I-4319]
MLRILKYLSKAEIGQMLIALVTIVGQVFFDLKLPDYMSDITTLVETPGSAMSDIWIAGGKMLLISLGSVACAIVTGYISA
RVGSSFTQRLRSLEFRKVESYGPAEMSKFSTASLITRSTNDITQIQMFITIGLQLIVKSPIMAVWAICKIAGEGFEWTLA
TGIAVVILLVAVVIMMAMVMPKFKAMQKLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLTDKLNVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVLDTD
PIVKTGTKTAADVARLGGGKTGTVEFRNVSFTYPGSREATLEGIDFTAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAG
QVLVDGVDVREYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDDVNGASSADVEMADTSTPAGRKREAELIAAGKRAEGA
AMPAEQMNRVKAAAGVAQATEFVERMDGTYTAPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVR
DALAKEAKGSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHQELLDTCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=464529 CNCMI4319_RS00830 WP_013362999.1 203986..205869(+) (rcrP) [Bifidobacterium bifidum strain CNCM I-4319]
ATGCTTCGCATCCTGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTTCTTCGACCTCAAACTGCCCGATTACATGTCAGACATCACCACGCTCGTCGAGACGCCGGGCAGCGCGATGAGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCATCTCCCTCGGCTCCGTCGCCTGTGCCATCGTCACCGGCTACATCTCCGCA
CGCGTCGGCTCGTCATTCACCCAGCGCCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTATGGCCCCGCCGAAATGAG
CAAATTCTCCACCGCGAGCCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATCGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCATATGCAAGATCGCCGGCGAAGGTTTCGAATGGACTCTCGCC
ACCGGCATCGCCGTCGTCATCCTGCTCGTCGCCGTCGTCATCATGATGGCCATGGTCATGCCCAAGTTCAAGGCCATGCA
GAAGCTCACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTCGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGGCCAAGTTCACCAAGGCCAACAAGGACCTCACCGACACGCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCCTATCTGATCGACGCCGC
CGGCCTGACGGACAAGCTCAACGTGTTCTCCAACATGGTCGTCTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTGATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTGCTCGACACCGAT
CCGATCGTCAAAACCGGCACCAAGACCGCCGCCGACGTGGCGCGTCTGGGCGGCGGGAAAACCGGCACCGTCGAGTTCCG
CAACGTGAGCTTCACCTACCCCGGCTCACGCGAGGCGACGCTCGAAGGCATCGACTTCACCGCCGAAAAGGGCCAGACCG
TCGCGTTCATCGGCTCCACCGGCTCCGGCAAGTCCAGCCTCATCAACCTCGTGCCGCGCTTCTACGACGTGTCGGCCGGG
CAGGTGCTCGTCGACGGTGTGGACGTGCGCGAATACGATCTGAAAGCCCTTCGCGACAAGATCGGATACGTGCCGCAGCA
GTCCGTGCTGTTCAAGGGCACGGTCGCATCCAACGTGAGCTACGGCGACGACGTGAACGGGGCAAGCTCCGCGGACGTCG
AAATGGCCGACACCTCCACTCCGGCCGGCCGCAAACGCGAAGCCGAACTCATCGCCGCGGGCAAGAGAGCGGAAGGCGCC
GCAATGCCGGCTGAACAGATGAACCGGGTCAAGGCGGCGGCCGGCGTCGCTCAGGCCACCGAGTTCGTCGAGCGCATGGA
CGGCACATACACCGCCCCGATCGCACAAGGCGGGTCCAACGTCTCCGGCGGCCAGAAGCAGCGCCTGTCAATCGCGCGCG
CCGTCTACCGCCACCCCGAAATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTTCGC
GACGCACTCGCCAAAGAAGCCAAGGGATCCACCAAGCTCATCGTCGCCCAGCGCATCGGCACGATCATGAACGCCGACCG
CATCATCGTGCTCGATGACGGCAAGGTCGTCGGCCAAGGCACCCATCAGGAACTGCTCGACACCTGCGATGTCTACCGTC
AGATCGCCGAATCCCAGCTCAGTCAGTCGGAACTGACCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-292)

ABC transporter (ABC_tran)

(361-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.567

100

0.483