Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HYE74_RS09765 Genome accession   NZ_CP058594
Coordinates   2043906..2046269 (-) Length   787 a.a.
NCBI ID   WP_179234478.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain ASRS217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2038906..2051269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYE74_RS09740 - 2039184..2039834 (-) 651 WP_014097896.1 HlyD family efflux transporter periplasmic adaptor subunit -
  HYE74_RS09745 - 2039842..2040282 (-) 441 WP_179234477.1 MarR family winged helix-turn-helix transcriptional regulator -
  HYE74_RS09750 dtd 2040529..2040969 (-) 441 WP_014097894.1 D-aminoacyl-tRNA deacylase -
  HYE74_RS09755 - 2040983..2043172 (-) 2190 WP_071451948.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HYE74_RS09760 - 2043394..2043915 (-) 522 WP_014097892.1 adenine phosphoribosyltransferase -
  HYE74_RS09765 recJ 2043906..2046269 (-) 2364 WP_179234478.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HYE74_RS09770 secDF 2046358..2048622 (-) 2265 WP_017551047.1 protein translocase subunit SecDF -
  HYE74_RS09775 - 2048768..2049088 (-) 321 WP_017551048.1 post-transcriptional regulator -
  HYE74_RS09780 spoVB 2049192..2050736 (+) 1545 WP_179234479.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88035.03 Da        Isoelectric Point: 5.5805

>NTDB_id=464478 HYE74_RS09765 WP_179234478.1 2043906..2046269(-) (recJ) [Heyndrickxia coagulans strain ASRS217]
MLQSRTRWRVPEMEPKAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGLAYYDPFLLHDMEKAAARIREAIKRE
EPVLVFGDYDADGVTSTAIMMAVLNDLGAHAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GITLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEDLAAIGTVADLVPLLDENRLI
AINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTEDTEEAGMLAETIDGLNKE
RQKIVNDMTNEAIELVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAECPQIRAIGADGKHLKLTLSKNGTTLDGIGFGLGNLAPHISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWARYVPEEDQAFVVFQKETLRNLPLPDFSVRLVSVATMEEARAFDPSNKNIVFLDLPKGPRM
MAALLEGGSPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKQHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESLTYQKKLAQYQMEKDLLYSSFQELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=464478 HYE74_RS09765 WP_179234478.1 2043906..2046269(-) (recJ) [Heyndrickxia coagulans strain ASRS217]
ATGCTGCAGTCAAGAACAAGATGGCGGGTGCCGGAAATGGAACCAAAAGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGCTAGCGTATTATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCGGCCCGCATCCGCGAAGCGATTAAAAGAGAA
GAACCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGCACTGCCATCATGATGGCCGTTTTAAACGATCT
TGGCGCCCATGCTGAATTTTACATCCCGGACCGGTTTAAAGAAGGGTACGGGCCAAATGAAGCGGCTTTCCGGCGGGCGG
CTGAAGAGGGTTTTCAGCTGATCATTACCGTTGATACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTC
GGGATCACGCTCATTATTACGGACCATCACGAACCTGGGCCGGTATTGCCGGAAGCTTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAGCTTGAAGATTTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGACGAAAACCGGCTGATT
GCCATAAACGGCATCAAACGGTTGAGAACGACAAAGCGGGCGGGGCTTGTGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATCAATGAAGAAACCATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCAGCCGGGCGCCTGCAGCATGCGGCAC
CGGCAGCGGAACTGCTAATGACCGAAGACACAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGACATGACAAATGAAGCAATCGAACTGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGCTGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGACCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGCATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGAGGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGACGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCGGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGACGGGGCCGAATGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GACGCTTTCTAAAAACGGCACAACGCTCGATGGGATCGGCTTCGGGCTCGGGAATCTTGCCCCGCATATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAGCTGTCCATCAACGAATGGAACAATATCCGTAAGCCGCAAATGATGGTGAAGGATATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGCACGGTACGTCCCGGAAGAAGA
CCAGGCTTTTGTTGTCTTCCAAAAAGAAACATTGCGGAACCTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGTCGGTTG
CGACAATGGAAGAGGCAAGGGCATTTGATCCTTCAAATAAAAACATTGTGTTTCTGGATCTTCCGAAAGGCCCGCGGATG
ATGGCGGCACTGCTTGAGGGCGGTTCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTCCCGACACGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTAAAGCAGCACGGGG
ATGAGCTGGCGGCTTATCGCGGCTGGTCGAGAAATACCATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTCTTACGTATCAAAAAAA
ACTAGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCAGGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(454-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.732

100

0.527