Detailed information NTG0464453

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: HYE74_RS03785
• Genome accession: NZ_CP058594
• Coordinates: 855040..856425 (+)
• Length: 461 a.a.
• NCBI ID: WP_179234264.1
• Uniprot ID: -
• Organism: Heyndrickxia coagulans strain ASRS217
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 850040..861425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HYE74_RS03770	-	850939..851622 (+)	684	WP_026684742.1	response regulator transcription factor	-
HYE74_RS03775	-	851961..853385 (-)	1425	WP_017551633.1	amino acid permease	-
HYE74_RS03780	-	853951..854793 (+)	843	WP_026684744.1	DegV family protein	-
HYE74_RS03785	comFA	855040..856425 (+)	1386	WP_179234264.1	DEAD/DEAH box helicase	Machinery gene
HYE74_RS03790	-	856418..857125 (+)	708	WP_179234265.1	ComF family protein	-
HYE74_RS03795	-	857192..857587 (+)	396	WP_013858610.1	TIGR03826 family flagellar region protein	-
HYE74_RS03800	flgM	857622..857924 (+)	303	WP_237682147.1	flagellar biosynthesis anti-sigma factor FlgM	-
HYE74_RS03805	-	857937..858407 (+)	471	WP_179234266.1	flagellar protein FlgN	-
HYE74_RS03810	flgK	858429..860045 (+)	1617	WP_179234267.1	flagellar hook-associated protein FlgK	-
HYE74_RS03815	flgL	860060..860953 (+)	894	WP_013858614.1	flagellar hook-associated protein FlgL	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 51454.73 Da
• Isoelectric Point: 8.8555

>NTDB_id=464453 HYE74_RS03785 WP_179234264.1 855040..856425(+) (comFA) [Heyndrickxia coagulans strain ASRS217]
MPSVFSEQLQRHLAGRILLEPEIPFSPELLEQHFKKGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACRPLITWAGPAPAFHPPRHPLHWDGTLSEGQQAASEAVKAAILQKNELLVWSVCGSGKTEIVFNGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDIPIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDAVIVDEVDAFPYTFD
ETLQCAVQKAAKDCCARIYLTATPSETWQLECKAGKRPFVTIPARYHRKPLPVPVFKWAGNWRKRFEKGKLPVPVEAWVK
KRLESGKQALLFLPNIRLMKKAEPVFKQLHPAIESVHAEDPDRKEKVERMRAGKTPLLLTTTILERGVTFPNIDVCVVGA
EDAIFTEAALVQIAGRAGRSADFPNGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide

• Length: 1386 bp

>NTDB_id=464453 HYE74_RS03785 WP_179234264.1 855040..856425(+) (comFA) [Heyndrickxia coagulans strain ASRS217]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACGCCACCTCGCCGGGCGGATCCTGCTCGAACCGGAAATCCCTTTTTCACC
GGAACTGCTCGAACAGCACTTTAAAAAAGGCTGGATCCGCGCTGAGCCGGCGATACAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGTGCCCACTGCGGGAAAACGAGTATTTATTGC
CGGAACTGCCTGATGATGGGGCGGGTCACCGCATGCAGGCCGCTTATCACATGGGCAGGCCCTGCGCCCGCATTCCACCC
GCCCCGGCACCCGCTCCATTGGGATGGCACCCTCTCTGAAGGGCAGCAGGCCGCATCCGAAGCGGTTAAAGCAGCCATTC
TTCAAAAAAACGAGCTTCTCGTTTGGTCAGTTTGCGGATCAGGAAAAACGGAGATCGTTTTCAACGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCGACCCCCAGAACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCCGATTGCCGCGCTCTACGGCGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTCATCTCCACTA
CCCACCAGCTGTACCGCTTTGCATCCGCCTTCGATGCCGTGATTGTGGATGAAGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGTGCGCCGTTCAAAAAGCGGCAAAAGACTGCTGCGCCCGCATTTATCTTACCGCAACACCAAGTGAAAC
ATGGCAGCTTGAATGCAAGGCAGGCAAGCGCCCGTTTGTCACGATCCCGGCCCGCTATCACCGCAAGCCTCTCCCCGTTC
CTGTATTCAAATGGGCAGGCAACTGGCGGAAAAGGTTTGAGAAAGGCAAGCTCCCGGTTCCGGTTGAAGCATGGGTAAAA
AAGAGGCTTGAATCCGGAAAACAAGCACTTCTTTTTCTCCCGAACATCCGTCTCATGAAAAAAGCAGAGCCAGTTTTTAA
ACAGCTGCATCCAGCGATTGAATCGGTGCACGCAGAAGACCCGGATCGGAAAGAAAAAGTGGAAAGGATGCGCGCCGGCA
AAACGCCGCTTTTGCTGACGACGACCATTCTTGAACGCGGCGTCACGTTCCCGAATATTGATGTCTGTGTCGTCGGGGCG
GAAGATGCCATCTTTACGGAAGCCGCCCTCGTCCAGATCGCGGGCCGAGCCGGAAGAAGCGCCGATTTCCCAAATGGAGA
CGTAACGTTTTTCCATTACGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTTTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (322-420)

• Type III restriction enzyme, res subunit (ResIII) (118-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	49.669	98.265	0.488
comFA	Latilactobacillus sakei subsp. sakei 23K	39.48	91.757	0.362