Detailed information NTG0464397

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JQM61_RS17675
• Genome accession: NZ_CP069198
• Coordinates: 3782748..3783752 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 152962
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3777748..3788752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQM61_RS17660 (JQM61_17660)	-	3778231..3779238 (+)	1008	WP_012613731.1	TolB family protein	-
JQM61_RS17665 (JQM61_17665)	mutS	3779364..3781931 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
JQM61_RS17670 (JQM61_17670)	fdxA	3781998..3782321 (+)	324	WP_003092272.1	ferredoxin FdxA	-
JQM61_RS17675 (JQM61_17675)	rpoS	3782748..3783752 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JQM61_RS17680 (JQM61_17680)	-	3783857..3784750 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
JQM61_RS17685 (JQM61_17685)	-	3784796..3785431 (-)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JQM61_RS17690 (JQM61_17690)	surE	3785464..3786213 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JQM61_RS17695 (JQM61_17695)	truD	3786201..3787268 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
JQM61_RS17700 (JQM61_17700)	ispF	3787265..3787738 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JQM61_RS17705 (JQM61_17705)	fghA	3787809..3788660 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=464397 JQM61_RS17675 WP_003113871.1 3782748..3783752(-) (rpoS) [Pseudomonas aeruginosa strain 152962]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=464397 JQM61_RS17675 WP_003113871.1 3782748..3783752(-) (rpoS) [Pseudomonas aeruginosa strain 152962]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653