Detailed information NTG0464342

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IS492_RS27425
• Genome accession: NZ_CP069177
• Coordinates: 5847774..5848778 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Z154
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5842774..5853778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IS492_RS27410 (IS492_27405)	-	5843257..5844264 (+)	1008	WP_003098486.1	TolB family protein	-
IS492_RS27415 (IS492_27410)	mutS	5844390..5846957 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
IS492_RS27420 (IS492_27415)	fdxA	5847024..5847347 (+)	324	WP_003092272.1	ferredoxin FdxA	-
IS492_RS27425 (IS492_27420)	rpoS	5847774..5848778 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IS492_RS27430 (IS492_27425)	-	5848883..5849776 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
IS492_RS27435 (IS492_27430)	-	5849822..5850457 (-)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IS492_RS27440 (IS492_27435)	surE	5850490..5851239 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IS492_RS27445 (IS492_27440)	truD	5851227..5852294 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
IS492_RS27450 (IS492_27445)	ispF	5852291..5852764 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IS492_RS27455 (IS492_27450)	fghA	5852835..5853686 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=464342 IS492_RS27425 WP_003113871.1 5847774..5848778(-) (rpoS) [Pseudomonas aeruginosa strain Z154]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=464342 IS492_RS27425 WP_003113871.1 5847774..5848778(-) (rpoS) [Pseudomonas aeruginosa strain Z154]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653