Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   IS492_RS25065 Genome accession   NZ_CP069177
Coordinates   5336985..5337314 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain Z154     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5331985..5342314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS492_RS25050 (IS492_25025) uvrB 5333372..5335384 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  IS492_RS25055 (IS492_25030) - 5335572..5336768 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  IS492_RS25065 (IS492_25040) comEA/comE1 5336985..5337314 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  IS492_RS25070 (IS492_25045) - 5337505..5339502 (-) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  IS492_RS25075 (IS492_25050) - 5339700..5340737 (-) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  IS492_RS25080 (IS492_25055) - 5340737..5341699 (-) 963 WP_016253165.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=464337 IS492_RS25065 WP_003104586.1 5336985..5337314(-) (comEA/comE1) [Pseudomonas aeruginosa strain Z154]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=464337 IS492_RS25065 WP_003104586.1 5336985..5337314(-) (comEA/comE1) [Pseudomonas aeruginosa strain Z154]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385