Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IS492_RS24230 Genome accession   NZ_CP069177
Coordinates   5152953..5153588 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain Z154     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5147953..5158588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS492_RS24195 (IS492_24170) - 5148403..5148648 (+) 246 WP_003110190.1 DUF2274 domain-containing protein -
  IS492_RS24200 (IS492_24175) murB 5149051..5150070 (-) 1020 WP_017001502.1 UDP-N-acetylmuramate dehydrogenase -
  IS492_RS24205 (IS492_24180) - 5150067..5150531 (-) 465 WP_031652575.1 low molecular weight protein-tyrosine-phosphatase -
  IS492_RS24210 (IS492_24185) kdsB 5150531..5151295 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IS492_RS24215 (IS492_24190) - 5151295..5151480 (-) 186 WP_003091157.1 Trm112 family protein -
  IS492_RS24220 (IS492_24195) lpxK 5151518..5152516 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  IS492_RS24225 (IS492_24200) - 5152516..5152956 (-) 441 WP_017001503.1 biopolymer transporter ExbD -
  IS492_RS24230 (IS492_24205) exbB 5152953..5153588 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IS492_RS24235 (IS492_24210) comA 5153661..5155886 (-) 2226 WP_031652574.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IS492_RS24240 (IS492_24215) - 5156017..5156550 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  IS492_RS24245 (IS492_24220) - 5156638..5157882 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=464330 IS492_RS24230 WP_003091163.1 5152953..5153588(-) (exbB) [Pseudomonas aeruginosa strain Z154]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=464330 IS492_RS24230 WP_003091163.1 5152953..5153588(-) (exbB) [Pseudomonas aeruginosa strain Z154]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81