Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HYG84_RS07935 Genome accession   NZ_CP058557
Coordinates   1660903..1662264 (+) Length   453 a.a.
NCBI ID   WP_212381882.1    Uniprot ID   A0A975PII8
Organism   Alkaliphilus sp. B6464     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655903..1667264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYG84_RS07915 (HYG84_07910) - 1656490..1656999 (+) 510 WP_212381876.1 UvrB/UvrC motif-containing protein -
  HYG84_RS07920 (HYG84_07915) - 1657011..1658033 (+) 1023 WP_212381878.1 protein arginine kinase -
  HYG84_RS07925 (HYG84_07920) - 1658057..1660498 (+) 2442 WP_330655607.1 ATP-dependent Clp protease ATP-binding subunit -
  HYG84_RS07930 (HYG84_07925) - 1660684..1660836 (+) 153 WP_212381880.1 hypothetical protein -
  HYG84_RS07935 (HYG84_07930) radA 1660903..1662264 (+) 1362 WP_212381882.1 DNA repair protein RadA Machinery gene
  HYG84_RS07940 (HYG84_07935) disA 1662438..1663514 (+) 1077 WP_212381884.1 DNA integrity scanning diadenylate cyclase DisA -
  HYG84_RS07945 (HYG84_07940) - 1663558..1663953 (-) 396 WP_212381886.1 DUF1573 domain-containing protein -
  HYG84_RS07950 (HYG84_07945) - 1664339..1664842 (+) 504 WP_212381888.1 CarD family transcriptional regulator -
  HYG84_RS07955 (HYG84_07950) - 1665015..1666124 (+) 1110 WP_212381890.1 PIN/TRAM domain-containing protein -
  HYG84_RS07960 (HYG84_07955) ispD 1666342..1667052 (+) 711 WP_330655608.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49781.61 Da        Isoelectric Point: 5.4638

>NTDB_id=464243 HYG84_RS07935 WP_212381882.1 1660903..1662264(+) (radA) [Alkaliphilus sp. B6464]
MAKVKSKFVCQECGYESAKWLGRCPGCSNWNSMEEEIVGGKKEFKRSPTIVSQSKPQPIKDVKSGAYERYDTQIKELNRV
LGGGLVKGSLTLITGEPGIGKSTLILQASSTVAETYGKTLYVSGEESEEQIKMRGERLSSLSDNLYIVSETNVDVIEKYI
EEYEPVFVIIDSIQTLFKEDLSSAPGSVSQVKECANNLMRIGKSKNIPMFIVAHVTKQGELAGPRVLEHMVDTVLHFEGE
RTQEFRILRALKNRFGTTSEIGVFEMREEGLVEVSNPSAIFLESLTPEAEGAIVVATVEGTRPLLVEIQALVAPTNAGFP
RRTAVGIDLNRLNLIIAVLEKKIGLPLMNQDIYVNVVGGLKLEGTSADLGVAMAIYSSMRGVPIPSKEMVAMGEISLTGE
LRPISQLEKMMKEAEKMGFITAIIPDKNKFKFDGNIMKYKGVNTLRDALELLS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=464243 HYG84_RS07935 WP_212381882.1 1660903..1662264(+) (radA) [Alkaliphilus sp. B6464]
ATGGCGAAGGTTAAGAGTAAGTTTGTATGTCAAGAATGTGGGTATGAGAGTGCTAAATGGTTAGGACGGTGTCCGGGATG
TAGTAACTGGAATAGTATGGAGGAAGAGATAGTAGGAGGTAAAAAGGAATTTAAACGATCCCCTACAATAGTTAGTCAAT
CTAAACCTCAGCCTATTAAAGATGTCAAATCTGGTGCTTATGAAAGATATGATACTCAGATTAAAGAATTAAATAGAGTT
TTAGGAGGAGGATTAGTAAAAGGATCTCTAACATTAATAACTGGAGAACCAGGTATTGGTAAATCTACTTTAATTTTACA
GGCCAGTAGCACTGTTGCAGAAACCTATGGAAAAACCCTTTATGTATCTGGAGAGGAATCTGAGGAGCAAATAAAGATGA
GGGGAGAAAGATTAAGCTCTCTTTCTGATAATTTATATATAGTTTCAGAAACAAATGTGGATGTTATTGAAAAGTATATT
GAGGAGTACGAGCCCGTGTTTGTTATTATAGACTCTATACAAACATTATTTAAAGAAGATCTTTCTTCCGCCCCTGGGAG
TGTTTCGCAGGTTAAGGAGTGTGCTAATAATTTAATGAGAATTGGTAAATCCAAAAATATTCCTATGTTTATAGTAGCTC
ATGTTACAAAGCAAGGTGAATTGGCAGGACCTAGGGTTTTAGAGCATATGGTTGACACGGTACTGCATTTTGAAGGAGAA
AGAACTCAAGAGTTTAGAATATTAAGGGCTTTAAAAAATAGATTTGGTACTACTAGTGAAATTGGTGTTTTTGAAATGAG
GGAAGAGGGGTTGGTTGAAGTTAGTAATCCTTCGGCTATATTTTTAGAATCATTAACTCCAGAGGCGGAAGGTGCTATTG
TAGTTGCAACGGTTGAAGGCACTAGACCACTTTTAGTGGAAATACAAGCATTGGTAGCTCCTACTAATGCAGGTTTCCCA
AGGCGAACTGCTGTAGGAATTGATCTAAACAGATTAAATTTAATTATTGCGGTTTTAGAAAAGAAAATAGGGCTACCTTT
AATGAATCAAGATATTTATGTGAATGTAGTGGGAGGATTAAAACTCGAAGGAACCTCTGCAGATTTAGGTGTTGCTATGG
CTATTTATTCTAGTATGCGAGGTGTACCTATTCCATCAAAGGAAATGGTTGCTATGGGAGAGATAAGCTTAACAGGAGAG
CTAAGACCTATTAGTCAGCTAGAAAAAATGATGAAAGAAGCTGAAAAAATGGGATTCATAACTGCTATAATACCTGATAA
AAATAAGTTTAAATTTGATGGGAATATTATGAAATATAAGGGCGTAAATACATTAAGAGATGCTCTAGAATTATTATCAT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.795

98.896

0.532
  radA Streptococcus mitis SK321

50.442

99.779

0.503
  radA Streptococcus mitis NCTC 12261

52

93.819

0.488
  radA Streptococcus pneumoniae Rx1

52

93.819

0.488
  radA Streptococcus pneumoniae D39

52

93.819

0.488
  radA Streptococcus pneumoniae R6

52

93.819

0.488
  radA Streptococcus pneumoniae TIGR4

52

93.819

0.488