Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FY034_RS01300 Genome accession   NZ_CP058409
Coordinates   269049..270401 (+) Length   450 a.a.
NCBI ID   WP_265553171.1    Uniprot ID   -
Organism   Trichlorobacter lovleyi strain IAE     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 264049..275401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY034_RS01285 (FY034_01295) - 266255..266980 (+) 726 WP_265553168.1 M48 family metallopeptidase -
  FY034_RS01290 (FY034_01300) - 266986..267567 (+) 582 WP_265553169.1 UbiX family flavin prenyltransferase -
  FY034_RS01295 (FY034_01305) - 267672..268862 (-) 1191 WP_265553170.1 FprA family A-type flavoprotein -
  FY034_RS01300 (FY034_01310) radA 269049..270401 (+) 1353 WP_265553171.1 DNA repair protein RadA Machinery gene
  FY034_RS01305 (FY034_01315) dksA 270477..270833 (+) 357 WP_265553172.1 RNA polymerase-binding protein DksA -
  FY034_RS01310 (FY034_01320) - 270892..272301 (+) 1410 WP_265553173.1 GAF domain-containing sensor histidine kinase -
  FY034_RS01315 (FY034_01325) - 272454..273158 (-) 705 WP_265553174.1 PilZ domain-containing protein -
  FY034_RS01320 (FY034_01330) cysS 273277..274740 (+) 1464 WP_265553175.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47177.43 Da        Isoelectric Point: 6.6898

>NTDB_id=464131 FY034_RS01300 WP_265553171.1 269049..270401(+) (radA) [Trichlorobacter lovleyi strain IAE]
MRQKTVFSCSQCGCQSPKWLGKCPDCGAWNSMLEEQQPSAAAVRSGRQLPGKSVALPIGEVPPQAEVRLGCGIGELDRVL
GGGLVPGSLVLIGGDPGIGKSTLLLQAMHHLAADGAVLYVSGEESAAQTRLRGERLGVSGRPLLVLAENGLEEIVAQVEK
LKPRAVVVDSIQTVWTQALESAPGSVSQVRESAGRLMLLAKGSGIPIFIVGHVTKDGAIAGPRVLEHMVDTVLYFEGDRG
HPYRILRAVKNRFGSTNEIGVFEMKSGGLAEVANPSELFLSERPLDAPGSVVTASLEGSRTLLVEIQALVTPSAYGTPRR
TTIGVDSNRLALLVAVLEKKAGLHLGGQDIFLNVAGGARLNEPAADLAMLLAVASSHLDRPVAAGAVVFGEVGLAGEVRA
VNQPEPRLGEATKLGFQQCILPAGNLRRLSEAGLELHGVATVQEVLQFLL

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=464131 FY034_RS01300 WP_265553171.1 269049..270401(+) (radA) [Trichlorobacter lovleyi strain IAE]
GTGCGTCAAAAAACCGTTTTCAGTTGCAGCCAGTGTGGCTGTCAGTCTCCCAAGTGGCTGGGCAAATGCCCTGACTGTGG
AGCCTGGAACAGCATGCTGGAGGAGCAGCAGCCATCAGCAGCAGCTGTCCGCAGCGGCCGGCAGCTGCCGGGCAAGAGCG
TTGCCCTGCCGATTGGCGAGGTGCCGCCCCAGGCGGAAGTGCGGCTGGGCTGCGGCATTGGCGAGCTGGACCGGGTGCTG
GGTGGCGGTCTGGTGCCCGGATCACTGGTGTTGATCGGCGGCGATCCCGGCATCGGCAAGTCAACCCTGTTGCTGCAGGC
GATGCACCACCTGGCGGCTGACGGAGCGGTGCTGTATGTGTCCGGTGAGGAGTCGGCCGCCCAGACCCGTCTGCGGGGCG
AACGGCTGGGGGTGAGCGGCAGACCGCTGTTGGTGCTGGCTGAGAACGGGCTGGAAGAGATCGTGGCCCAGGTGGAGAAA
CTCAAGCCGCGGGCCGTGGTGGTGGACTCGATCCAGACCGTCTGGACCCAGGCACTGGAATCTGCCCCCGGTTCGGTCAG
CCAGGTGCGGGAGTCGGCCGGCCGGCTGATGCTGCTGGCCAAAGGCAGCGGCATTCCGATCTTTATTGTCGGCCATGTCA
CCAAGGACGGTGCCATTGCCGGACCGCGGGTGCTGGAGCATATGGTGGACACGGTGCTCTATTTTGAGGGTGATCGCGGC
CACCCCTACCGGATCCTGCGGGCAGTCAAGAACCGCTTTGGTTCTACCAATGAGATCGGTGTCTTTGAGATGAAGTCCGG
CGGCCTGGCCGAGGTGGCCAATCCATCCGAGCTGTTCCTGTCCGAGCGTCCCCTTGATGCCCCCGGCTCGGTGGTGACCG
CCTCGCTGGAGGGTAGCCGCACCCTGCTGGTCGAGATCCAGGCCCTGGTGACCCCCAGCGCCTACGGGACGCCCCGCCGG
ACCACTATCGGGGTTGACAGTAACCGTCTGGCGCTGCTGGTGGCGGTGCTGGAAAAGAAGGCCGGGCTGCACCTGGGGGG
GCAGGATATCTTCCTGAATGTGGCCGGCGGTGCCCGGCTGAATGAACCGGCAGCTGATCTGGCCATGTTGCTGGCGGTGG
CCTCAAGTCACCTGGATCGTCCGGTTGCAGCCGGTGCCGTGGTGTTTGGCGAGGTCGGTCTGGCCGGTGAGGTGCGGGCC
GTTAACCAGCCGGAGCCGAGGCTGGGTGAGGCCACGAAACTTGGTTTCCAGCAGTGCATCCTGCCTGCCGGTAATCTGAG
GCGGCTCTCCGAGGCGGGACTGGAGCTGCACGGCGTAGCGACGGTGCAGGAGGTGCTGCAGTTCCTGCTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-32)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.291

100

0.567
  radA Streptococcus pneumoniae Rx1

52.784

99.778

0.527
  radA Streptococcus pneumoniae D39

52.784

99.778

0.527
  radA Streptococcus pneumoniae R6

52.784

99.778

0.527
  radA Streptococcus pneumoniae TIGR4

52.784

99.778

0.527
  radA Streptococcus mitis SK321

52.784

99.778

0.527
  radA Streptococcus mitis NCTC 12261

52.561

99.778

0.524