Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HXS77_RS13720 Genome accession   NZ_CP058355
Coordinates   2848792..2849421 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AMSCJX03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843792..2854421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS77_RS13705 (HXS77_13705) helD 2844034..2846088 (-) 2055 WP_000420536.1 DNA helicase IV -
  HXS77_RS13710 (HXS77_13710) yccF 2846211..2846657 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HXS77_RS13715 (HXS77_13715) yccS 2846667..2848829 (+) 2163 WP_178887627.1 YccS family putative transporter -
  HXS77_RS13720 (HXS77_13720) sxy/tfoX 2848792..2849421 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HXS77_RS13725 (HXS77_13725) sulA 2849640..2850149 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HXS77_RS13730 (HXS77_13730) ompA 2850506..2851546 (+) 1041 WP_097731564.1 porin OmpA -
  HXS77_RS13735 (HXS77_13735) matP 2851622..2852074 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HXS77_RS13740 (HXS77_13740) ycbZ 2852260..2854020 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=464061 HXS77_RS13720 WP_000839153.1 2848792..2849421(-) (sxy/tfoX) [Escherichia coli strain AMSCJX03]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=464061 HXS77_RS13720 WP_000839153.1 2848792..2849421(-) (sxy/tfoX) [Escherichia coli strain AMSCJX03]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1