Detailed information NTG0463990

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HW090_RS06745
• Genome accession: NZ_CP058349
• Coordinates: 1533669..1534928 (-)
• Length: 419 a.a.
• NCBI ID: WP_179112790.1
• Uniprot ID: A0A7L5RTZ5
• Organism: Pseudomonas sp. ABC1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1528669..1539928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW090_RS06720 (HW090_06720)	-	1529046..1530443 (+)	1398	WP_179112785.1	heavy metal sensor histidine kinase	-
HW090_RS06725 (HW090_06725)	-	1530474..1530803 (-)	330	WP_179112786.1	DUF2790 domain-containing protein	-
HW090_RS06730 (HW090_06730)	rpoH	1531014..1531868 (-)	855	WP_179112787.1	RNA polymerase sigma factor RpoH	-
HW090_RS06735 (HW090_06735)	ftsX	1531981..1532994 (-)	1014	WP_179112788.1	permease-like cell division protein FtsX	-
HW090_RS06740 (HW090_06740)	ftsE	1532994..1533662 (-)	669	WP_179112789.1	cell division ATP-binding protein FtsE	-
HW090_RS06745 (HW090_06745)	pilA	1533669..1534928 (-)	1260	WP_179112790.1	signal recognition particle-docking protein FtsY	Machinery gene
HW090_RS06750 (HW090_06750)	-	1535197..1536549 (+)	1353	WP_179112791.1	pitrilysin family protein	-
HW090_RS06755 (HW090_06755)	-	1536542..1538023 (+)	1482	WP_179112792.1	pitrilysin family protein	-
HW090_RS06760 (HW090_06760)	rsmD	1538023..1538628 (+)	606	WP_179112793.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HW090_RS06765 (HW090_06765)	-	1538643..1539350 (+)	708	WP_179112794.1	2'-5' RNA ligase family protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 44816.74 Da
• Isoelectric Point: 4.3951

>NTDB_id=463990 HW090_RS06745 WP_179112790.1 1533669..1534928(-) (pilA) [Pseudomonas sp. ABC1]
MFGSNDDKKTPVETGEKKGLFGWFRKKPQVTDAPESDETVADDLPAPSEPVPEAPQPEPVNDVLQAPTAPHDPVAEPEPE
PEPEPEPEPEPEPEPEPEPEPPVPVPAAPAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLEELETRLLTADV
GVEATGVIMQNLTRRVARKELADSGALYTALQQELAELLRPVEQPLQIDTGKQPYVILVVGVNGAGKTTTIGKLAKKLQL
EGKKVMLAAGDTFRAAAVEQLQVWGERNDIAVIAQHTGADSASVIFDAVQAAKARGVDVLIADTAGRLHTKDNLMEELKK
VHRVIGKLDDTAPHEVLLVLDAGTGQNAINQTRQFNQAVNLTGLALTKLDGTAKGGVIFALAQQFGTPIRYIGVGEGIDD
LRTFEADAFVSALFAEREA

Nucleotide

• Length: 1260 bp

>NTDB_id=463990 HW090_RS06745 WP_179112790.1 1533669..1534928(-) (pilA) [Pseudomonas sp. ABC1]
ATGTTTGGTTCCAACGACGACAAAAAGACACCGGTCGAGACCGGAGAAAAGAAAGGCCTGTTCGGCTGGTTTCGTAAAAA
GCCCCAGGTAACGGATGCTCCCGAGTCCGATGAAACCGTTGCGGATGACCTTCCCGCGCCGTCCGAACCCGTGCCCGAGG
CGCCGCAGCCTGAGCCTGTGAATGACGTGTTGCAGGCGCCGACCGCGCCCCACGACCCTGTTGCAGAGCCAGAGCCAGAG
CCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCGCCCGTCCCTGTGCCGGC
AGCGCCCGCCAAGCTCGGCTTTTTCGCACGCTTGCGCCAGGGCCTGTCGAAGACCAGCGCCAGCATCGGCGAGGGCATGG
CCAGCCTGTTCCTGGGCAAGAAGGCCATCGACGACGACCTGCTCGAAGAGCTGGAAACCCGCCTGCTGACGGCCGACGTG
GGCGTCGAGGCGACGGGCGTCATCATGCAGAACCTGACGCGCCGCGTGGCACGCAAGGAGCTGGCCGATAGCGGCGCCCT
GTATACCGCCTTGCAACAGGAACTGGCCGAGCTACTGCGTCCGGTCGAACAACCCTTGCAGATCGATACCGGCAAGCAGC
CCTACGTGATCCTGGTGGTGGGTGTGAACGGTGCCGGCAAGACCACGACCATCGGCAAACTGGCGAAAAAGCTGCAGCTT
GAAGGCAAGAAAGTCATGCTGGCCGCAGGCGACACCTTCCGTGCCGCAGCGGTCGAGCAATTGCAGGTGTGGGGTGAGCG
CAACGACATCGCCGTGATCGCCCAGCACACCGGCGCCGATTCCGCCTCGGTGATCTTCGATGCGGTACAGGCGGCCAAGG
CCCGTGGCGTGGATGTCCTGATCGCGGACACCGCAGGTCGCCTGCACACCAAGGACAACCTCATGGAAGAGTTGAAGAAA
GTGCATCGGGTGATCGGCAAGCTGGATGACACCGCGCCCCACGAAGTGCTGCTGGTGCTGGATGCCGGTACCGGGCAGAA
CGCCATCAACCAGACCCGTCAGTTCAACCAGGCGGTCAACCTGACCGGGCTGGCCCTGACCAAACTGGACGGGACCGCCA
AGGGCGGTGTGATCTTCGCCCTGGCCCAGCAGTTCGGCACGCCGATACGCTATATCGGCGTTGGCGAAGGCATCGACGAC
CTGCGCACCTTCGAGGCCGACGCCTTCGTGTCGGCCCTGTTCGCCGAGCGGGAGGCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (130-195)

• SRP54-type protein, GTPase domain (SRP54) (215-414)

3D structure

• AlphaFold DB: A0A7L5RTZ5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.687	100	0.487