Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   HYD32_RS09115 Genome accession   NZ_CP058345
Coordinates   1823173..1824312 (-) Length   379 a.a.
NCBI ID   WP_072614345.1    Uniprot ID   -
Organism   Leuconostoc sp. MTCC 10508     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1818173..1829312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYD32_RS09095 - 1818550..1819215 (+) 666 WP_072614341.1 NAD(P)H-hydrate epimerase -
  HYD32_RS09100 - 1819280..1819750 (-) 471 WP_072614342.1 Rrf2 family transcriptional regulator -
  HYD32_RS09105 - 1819804..1821969 (-) 2166 WP_072614343.1 YhgE/Pip domain-containing protein -
  HYD32_RS09110 rlmH 1822063..1822542 (-) 480 WP_072614344.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  HYD32_RS09115 htrA 1823173..1824312 (-) 1140 WP_072614345.1 S1C family serine protease Regulator
  HYD32_RS09120 yycI 1824373..1825167 (-) 795 WP_072614346.1 two-component system regulatory protein YycI -
  HYD32_RS09125 - 1825226..1826518 (-) 1293 WP_072614347.1 hypothetical protein -
  HYD32_RS09130 walK 1826508..1828373 (-) 1866 WP_105299763.1 cell wall metabolism sensor histidine kinase WalK -
  HYD32_RS09135 yycF 1828441..1829148 (-) 708 WP_010281559.1 response regulator YycF -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 39216.53 Da        Isoelectric Point: 9.9329

>NTDB_id=463967 HYD32_RS09115 WP_072614345.1 1823173..1824312(-) (htrA) [Leuconostoc sp. MTCC 10508]
MVQSALTKTLLTGVIAGVVGGGAILYGQQGVQLLQNQNQKVSTTATSTKTIAKNATATSAYNKVSDAVVSVLNFTKSSQG
SYQESSEGSGVIYKKTDGSAFIVTNNHVITGAAKIQVMLHSGKKVTATLVGKDAMTDLAVLKIDGTDVTTTAQFGDSSKI
TVGENVLAIGSPLGSEYASSVTQGIISAKKRLVETTSENGQNYGGSTVIQTDAAINPGNSGGPLINFAGQVIGINSMKLS
TSSSGTSVEGMGFAIPSDQVVDIVNKLVKNGKVTRPAIGISLINLSEVTASEQKSTLKIPDSVTGGVVVMSLTNNGPADK
AGLKKYDVIVGINGKKVSSQADLREELYKNSLGDTITLTYYHQDTKKTVKVKLTQKLAS

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=463967 HYD32_RS09115 WP_072614345.1 1823173..1824312(-) (htrA) [Leuconostoc sp. MTCC 10508]
ATGGTACAATCAGCATTAACAAAAACGTTGTTAACTGGCGTCATTGCTGGTGTTGTTGGTGGAGGAGCAATTTTGTATGG
GCAACAAGGTGTACAATTGTTACAAAATCAAAATCAAAAAGTAAGTACGACAGCAACAAGTACAAAAACGATTGCCAAGA
ATGCAACCGCTACATCAGCTTATAATAAGGTATCAGATGCAGTTGTATCTGTATTAAACTTTACTAAATCTAGTCAAGGT
AGTTATCAAGAATCGTCAGAAGGTTCTGGCGTGATCTATAAAAAAACAGATGGGTCGGCATTTATTGTAACGAATAATCA
CGTCATCACTGGAGCGGCTAAAATTCAAGTTATGCTGCACAGTGGGAAGAAAGTGACCGCAACACTAGTCGGCAAAGATG
CGATGACTGACTTAGCTGTTCTGAAGATCGACGGCACAGACGTTACGACAACTGCACAATTTGGCGATTCAAGTAAAATA
ACTGTTGGTGAAAACGTCTTGGCAATTGGTTCGCCGCTGGGATCTGAGTATGCTTCGTCAGTGACGCAAGGTATCATTTC
TGCCAAAAAAAGGTTAGTTGAGACGACATCTGAAAATGGGCAGAATTATGGTGGATCCACGGTTATTCAGACGGATGCTG
CCATTAACCCTGGTAACTCAGGGGGACCATTAATTAATTTTGCAGGACAAGTTATTGGTATTAACTCAATGAAGTTATCA
ACATCTTCTTCGGGAACGAGCGTTGAGGGGATGGGTTTTGCAATTCCTTCTGATCAAGTCGTTGACATTGTTAACAAATT
AGTCAAAAATGGTAAGGTCACACGACCAGCAATCGGTATTAGCTTGATTAATTTGTCGGAAGTAACAGCTTCTGAGCAAA
AATCAACTTTGAAAATTCCAGATAGTGTTACTGGTGGTGTTGTAGTAATGAGTTTGACTAACAATGGCCCAGCGGATAAA
GCTGGATTGAAAAAGTACGATGTTATCGTTGGCATTAATGGTAAAAAGGTAAGTTCACAGGCTGATCTGCGAGAAGAACT
GTACAAGAATTCGCTTGGGGACACAATAACATTGACTTATTATCATCAGGATACTAAGAAGACAGTCAAGGTTAAATTAA
CACAGAAATTAGCAAGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

52.394

93.668

0.491

  htrA Streptococcus gordonii str. Challis substr. CH1

48.285

100

0.483

  htrA Streptococcus pneumoniae D39

52.924

90.237

0.478

  htrA Streptococcus pneumoniae TIGR4

52.924

90.237

0.478

  htrA Streptococcus pneumoniae R6

52.924

90.237

0.478

  htrA Streptococcus pneumoniae Rx1

52.924

90.237

0.478

  htrA Streptococcus mutans UA159

52.819

88.918

0.47