Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JNN82_RS23105 Genome accession   NZ_CP068830
Coordinates   4771805..4772281 (+) Length   158 a.a.
NCBI ID   WP_001186193.1    Uniprot ID   A0A0H2Z4W9
Organism   Escherichia coli strain RIVM_C018707     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4766805..4777281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN82_RS23070 (JNN82_23070) - 4767303..4768187 (+) 885 WP_001116795.1 YfjP family GTPase -
  JNN82_RS23075 (JNN82_23075) - 4768390..4769070 (+) 681 WP_021515201.1 WYL domain-containing protein -
  JNN82_RS23080 (JNN82_23080) - 4769221..4769898 (+) 678 WP_060579144.1 hypothetical protein -
  JNN82_RS23085 (JNN82_23085) - 4769904..4770137 (+) 234 WP_000883181.1 DUF905 family protein -
  JNN82_RS23090 (JNN82_23090) - 4770227..4771045 (+) 819 WP_001175155.1 DUF932 domain-containing protein -
  JNN82_RS23095 (JNN82_23095) - 4771071..4771211 (-) 141 WP_000997937.1 hypothetical protein -
  JNN82_RS23100 (JNN82_23100) - 4771311..4771790 (+) 480 WP_000706978.1 antirestriction protein -
  JNN82_RS23105 (JNN82_23105) radC 4771805..4772281 (+) 477 WP_001186193.1 RadC family protein Machinery gene
  JNN82_RS23110 (JNN82_23110) - 4772368..4772589 (+) 222 WP_000692347.1 DUF987 domain-containing protein -
  JNN82_RS23115 (JNN82_23115) - 4772669..4773037 (+) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  JNN82_RS23120 (JNN82_23120) cbtA 4773126..4773503 (+) 378 WP_000854820.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  JNN82_RS23125 (JNN82_23125) - 4773500..4773697 (+) 198 Protein_4591 DUF5983 family protein -
  JNN82_RS23130 (JNN82_23130) - 4773725..4773922 (+) 198 WP_085949158.1 DUF957 domain-containing protein -
  JNN82_RS23135 (JNN82_23135) - 4774007..4774567 (+) 561 Protein_4593 DUF4942 domain-containing protein -
  JNN82_RS23140 (JNN82_23140) cadC 4775402..4776940 (+) 1539 WP_001187178.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=463918 JNN82_RS23105 WP_001186193.1 4771805..4772281(+) (radC) [Escherichia coli strain RIVM_C018707]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=463918 JNN82_RS23105 WP_001186193.1 4771805..4772281(+) (radC) [Escherichia coli strain RIVM_C018707]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z4W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399