Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | HXP32_RS03160 | Genome accession | NZ_CP058340 |
| Coordinates | 635011..635955 (-) | Length | 314 a.a. |
| NCBI ID | WP_002777230.1 | Uniprot ID | A0A3Z8C350 |
| Organism | Campylobacter coli strain 20A420 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 624877..663145 | 635011..635955 | within | 0 |
Gene organization within MGE regions
Location: 624877..663145
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXP32_RS03110 (HXP32_03120) | - | 624877..626433 (-) | 1557 | WP_065980057.1 | DNA polymerase III subunit gamma/tau | - |
| HXP32_RS03115 (HXP32_03125) | rho | 626436..627734 (-) | 1299 | WP_002780613.1 | transcription termination factor Rho | - |
| HXP32_RS03120 (HXP32_03130) | - | 627847..630210 (+) | 2364 | WP_072227406.1 | heavy metal translocating P-type ATPase | - |
| HXP32_RS03125 (HXP32_03135) | - | 630203..630403 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| HXP32_RS03130 (HXP32_03140) | - | 630433..630732 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| HXP32_RS03135 (HXP32_03145) | - | 630809..631372 (+) | 564 | WP_002820231.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| HXP32_RS03140 (HXP32_03150) | rfaD | 631369..632322 (+) | 954 | WP_002831601.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| HXP32_RS03145 (HXP32_03155) | rfaE1 | 632315..633700 (+) | 1386 | WP_002831599.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| HXP32_RS03150 (HXP32_03160) | gmhA | 633697..634257 (+) | 561 | WP_002831598.1 | D-sedoheptulose 7-phosphate isomerase | - |
| HXP32_RS03155 (HXP32_03165) | - | 634257..635018 (+) | 762 | WP_065980056.1 | glycosyltransferase family 25 protein | - |
| HXP32_RS03160 (HXP32_03170) | waaF | 635011..635955 (-) | 945 | WP_002777230.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| HXP32_RS03165 (HXP32_03175) | - | 636014..636835 (+) | 822 | WP_032685539.1 | glycosyltransferase family 2 protein | - |
| HXP32_RS09010 (HXP32_03180) | - | 637176..637322 (-) | 147 | WP_168848228.1 | hypothetical protein | - |
| HXP32_RS08925 (HXP32_03185) | - | 637319..637555 (-) | 237 | WP_255296982.1 | alpha-2,3-sialyltransferase | - |
| HXP32_RS09015 (HXP32_03190) | - | 637563..637876 (-) | 314 | Protein_628 | alpha-2,3-sialyltransferase | - |
| HXP32_RS03190 (HXP32_03200) | - | 638004..638804 (+) | 801 | WP_002777224.1 | class I SAM-dependent methyltransferase | - |
| HXP32_RS03195 (HXP32_03205) | - | 638885..639820 (+) | 936 | WP_002777223.1 | glycosyltransferase family 2 protein | - |
| HXP32_RS03200 (HXP32_03210) | - | 639808..641019 (+) | 1212 | WP_002826798.1 | glycosyltransferase family 8 protein | - |
| HXP32_RS03205 (HXP32_03215) | - | 641006..642061 (-) | 1056 | WP_002777221.1 | glycosyltransferase family 4 protein | - |
| HXP32_RS03210 (HXP32_03220) | - | 642058..643605 (-) | 1548 | WP_002777220.1 | glycosyltransferase | - |
| HXP32_RS03215 (HXP32_03225) | - | 643602..644489 (-) | 888 | WP_002777219.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| HXP32_RS03220 (HXP32_03230) | waaC | 644482..645510 (-) | 1029 | WP_002787741.1 | lipopolysaccharide heptosyltransferase I | - |
| HXP32_RS03225 (HXP32_03235) | - | 645575..646366 (+) | 792 | WP_031263840.1 | 3'-5' exonuclease | - |
| HXP32_RS03230 (HXP32_03240) | galE | 646423..647409 (+) | 987 | WP_002777216.1 | UDP-glucose 4-epimerase GalE | - |
| HXP32_RS03235 (HXP32_03245) | - | 647403..649103 (+) | 1701 | WP_002786296.1 | ABC transporter ATP-binding protein | - |
| HXP32_RS03240 (HXP32_03250) | - | 649100..650176 (+) | 1077 | WP_065980004.1 | glycosyltransferase | - |
| HXP32_RS03245 (HXP32_03255) | - | 650169..651098 (+) | 930 | WP_002777213.1 | glycosyltransferase family 2 protein | - |
| HXP32_RS03250 (HXP32_03260) | - | 651086..652183 (+) | 1098 | WP_002786294.1 | glycosyltransferase | - |
| HXP32_RS03255 (HXP32_03265) | - | 652187..654331 (+) | 2145 | WP_002787735.1 | STT3 domain-containing protein | - |
| HXP32_RS03260 (HXP32_03270) | pglA | 654343..655473 (+) | 1131 | WP_002777209.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| HXP32_RS03265 (HXP32_03275) | pglC | 655466..656068 (+) | 603 | WP_002777206.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| HXP32_RS03270 (HXP32_03280) | pglD | 656055..656642 (+) | 588 | WP_002780649.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| HXP32_RS03275 (HXP32_03285) | pglE | 656797..657957 (+) | 1161 | WP_002777202.1 | UDP-N-acetylbacillosamine transaminase | - |
| HXP32_RS03280 (HXP32_03290) | pglF | 657960..659730 (+) | 1771 | Protein_647 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| HXP32_RS03285 (HXP32_03295) | - | 659945..660337 (+) | 393 | WP_002777196.1 | chemotaxis response regulator CheY | - |
| HXP32_RS03290 (HXP32_03300) | - | 660351..661199 (+) | 849 | WP_002777195.1 | 50S ribosomal protein L11 methyltransferase | - |
| HXP32_RS03295 (HXP32_03305) | ftsH | 661199..663145 (+) | 1947 | WP_002780655.1 | ATP-dependent zinc metalloprotease FtsH | - |
Sequence
Protein
Download Length: 314 a.a. Molecular weight: 36065.60 Da Isoelectric Point: 10.2686
>NTDB_id=463916 HXP32_RS03160 WP_002777230.1 635011..635955(-) (waaF) [Campylobacter coli strain 20A420]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT
Nucleotide
Download Length: 945 bp
>NTDB_id=463916 HXP32_RS03160 WP_002777230.1 635011..635955(-) (waaF) [Campylobacter coli strain 20A420]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCCAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCCAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
83.067 |
99.682 |
0.828 |