Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   B18_RS13290 Genome accession   NZ_CP058332
Coordinates   2890586..2891110 (-) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain B18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2885586..2896110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B18_RS13275 (B18_13255) - 2885670..2889146 (-) 3477 WP_023100239.1 PilC/PilY family type IV pilus protein -
  B18_RS13280 (B18_13260) - 2889160..2889765 (-) 606 WP_003116263.1 pilus assembly protein -
  B18_RS13285 (B18_13265) - 2889762..2890577 (-) 816 WP_003116262.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  B18_RS13290 (B18_13270) pilV 2890586..2891110 (-) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  B18_RS13295 (B18_13275) - 2891120..2891608 (-) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  B18_RS13300 (B18_13280) - 2891731..2892231 (-) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  B18_RS13305 (B18_13285) thiO 2892371..2893465 (+) 1095 WP_104708135.1 glycine oxidase ThiO -
  B18_RS13310 (B18_13290) pilR 2893511..2894848 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=463852 B18_RS13290 WP_003116261.1 2890586..2891110(-) (pilV) [Pseudomonas aeruginosa strain B18]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=463852 B18_RS13290 WP_003116261.1 2890586..2891110(-) (pilV) [Pseudomonas aeruginosa strain B18]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCTGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598