Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPOK310_RS05635 Genome accession   NC_020509
Coordinates   1178251..1179300 (+) Length   349 a.a.
NCBI ID   WP_015429322.1    Uniprot ID   -
Organism   Helicobacter pylori OK310     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173251..1184300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS08620 - 1174214..1174363 (-) 150 WP_414842386.1 DUF874 family protein -
  HPOK310_RS05620 (HPOK310_1084) - 1174296..1175402 (-) 1107 WP_015429319.1 DUF874 family protein -
  HPOK310_RS05625 (HPOK310_1085) asd 1175834..1176874 (-) 1041 WP_015429320.1 aspartate-semialdehyde dehydrogenase -
  HPOK310_RS05630 (HPOK310_1086) hisS 1176861..1178189 (-) 1329 WP_015429321.1 histidine--tRNA ligase -
  HPOK310_RS05635 (HPOK310_1087) waaF 1178251..1179300 (+) 1050 WP_015429322.1 lipopolysaccharide heptosyltransferase II Regulator
  HPOK310_RS05640 (HPOK310_1088) - 1179493..1179711 (-) 219 WP_000744170.1 hypothetical protein -
  HPOK310_RS05645 (HPOK310_1089) fusA 1180256..1182334 (-) 2079 WP_015429323.1 elongation factor G -
  HPOK310_RS05650 (HPOK310_1090) rpsG 1182346..1182813 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPOK310_RS05655 (HPOK310_1091) rpsL 1182829..1183236 (-) 408 WP_001142317.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39711.74 Da        Isoelectric Point: 9.9538

>NTDB_id=46376 HPOK310_RS05635 WP_015429322.1 1178251..1179300(+) (waaF) [Helicobacter pylori OK310]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKRDEKIEAVFIDDTKKSFFRLLAIHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEERHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=46376 HPOK310_RS05635 WP_015429322.1 1178251..1179300(+) (waaF) [Helicobacter pylori OK310]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTTGGCCCACAAATGACTTGCGAACTTTTCA
AAAGAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCATTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGACATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTATTAGAAGAAAGGCATGAAATTTATTTTTTTG
GAGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTATAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCCAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTACTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(77-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364

Multiple sequence alignment