Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HXS83_RS16565 Genome accession   NZ_CP058318
Coordinates   3361102..3361716 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain M92     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3356102..3366716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS83_RS16550 (HXS83_16560) helD 3356326..3358380 (-) 2055 WP_177712278.1 DNA helicase IV -
  HXS83_RS16555 (HXS83_16565) - 3358506..3358952 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HXS83_RS16560 (HXS83_16570) yccS 3358971..3361124 (+) 2154 WP_032941200.1 YccS family putative transporter -
  HXS83_RS16565 (HXS83_16575) sxy/tfoX 3361102..3361716 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  HXS83_RS16570 (HXS83_16580) sulA 3361934..3362443 (+) 510 WP_003836838.1 SOS-induced cell division inhibitor SulA -
  HXS83_RS16575 (HXS83_16585) ompA 3362801..3363847 (+) 1047 WP_003035883.1 porin OmpA -
  HXS83_RS16580 (HXS83_16590) matP 3363937..3364389 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HXS83_RS16585 (HXS83_16595) - 3364575..3366335 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=463742 HXS83_RS16565 WP_003035889.1 3361102..3361716(-) (sxy/tfoX) [Citrobacter freundii strain M92]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=463742 HXS83_RS16565 WP_003035889.1 3361102..3361716(-) (sxy/tfoX) [Citrobacter freundii strain M92]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686