Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN35_RS09685 Genome accession   NZ_CP068828
Coordinates   2039351..2040778 (-) Length   475 a.a.
NCBI ID   WP_001546874.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C030443     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2034351..2045778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN35_RS09655 (JNN35_09655) yeeZ 2034406..2035230 (+) 825 WP_110914922.1 SDR family oxidoreductase -
  JNN35_RS09660 (JNN35_09660) yeeY 2035276..2036205 (+) 930 WP_019842103.1 LysR substrate-binding domain-containing protein -
  JNN35_RS09665 (JNN35_09665) yoeI 2036420..2036482 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN35_RS09670 (JNN35_09670) plaP 2036472..2037830 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN35_RS09675 (JNN35_09675) tsuA 2038009..2039067 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  JNN35_RS09680 (JNN35_09680) tsuB 2039081..2039308 (+) 228 WP_001546876.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JNN35_RS09685 (JNN35_09685) sbcB 2039351..2040778 (-) 1428 WP_001546874.1 exodeoxyribonuclease I Machinery gene
  JNN35_RS09690 (JNN35_09690) dacD 2040987..2042153 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN35_RS09695 (JNN35_09695) sbmC 2042272..2042745 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  JNN35_RS09700 (JNN35_09700) yeeA 2042943..2044001 (+) 1059 WP_001200891.1 FUSC family protein -
  JNN35_RS09705 (JNN35_09705) tmaR 2044173..2044502 (+) 330 WP_000450409.1 DUF496 family protein -
  JNN35_RS09710 (JNN35_09710) - 2044603..2044785 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JNN35_RS09715 (JNN35_09715) - 2044857..2044985 (+) 129 Protein_1923 transposase domain-containing protein -
  JNN35_RS09720 (JNN35_09720) - 2045274..2045354 (-) 81 Protein_1924 hypothetical protein -
  JNN35_RS09725 (JNN35_09725) yeeW 2045400..2045594 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54325.58 Da        Isoelectric Point: 5.3435

>NTDB_id=463720 JNN35_RS09685 WP_001546874.1 2039351..2040778(-) (sbcB) [Escherichia coli strain RIVM_C030443]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWS
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPELLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=463720 JNN35_RS09685 WP_001546874.1 2039351..2040778(-) (sbcB) [Escherichia coli strain RIVM_C030443]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGAGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCAGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTATTGCAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581