Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPOK310_RS02805 Genome accession   NC_020509
Coordinates   565253..566773 (+) Length   506 a.a.
NCBI ID   WP_015428897.1    Uniprot ID   -
Organism   Helicobacter pylori OK310     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 560253..571773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS02775 (HPOK310_0547) moaC 560402..560878 (+) 477 WP_015428892.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPOK310_RS02780 (HPOK310_0548) hpaA 560997..561779 (+) 783 WP_015428893.1 flagellar sheath lipoprotein HpaA -
  HPOK310_RS02785 (HPOK310_0549) - 561804..562640 (+) 837 WP_041199912.1 outer membrane protein -
  HPOK310_RS02790 (HPOK310_0550) tig 562753..564108 (+) 1356 WP_015428895.1 trigger factor -
  HPOK310_RS02795 (HPOK310_0551) clpP 564131..564718 (+) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPOK310_RS02800 (HPOK310_0552) def 564723..565250 (+) 528 WP_015428896.1 peptide deformylase -
  HPOK310_RS02805 (HPOK310_0553) comM 565253..566773 (+) 1521 WP_015428897.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPOK310_RS02810 (HPOK310_0554) - 566798..568858 (+) 2061 WP_015428898.1 heavy metal translocating P-type ATPase -
  HPOK310_RS02815 (HPOK310_0555) - 568894..570132 (+) 1239 WP_015428899.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57263.26 Da        Isoelectric Point: 8.3918

>NTDB_id=46368 HPOK310_RS02805 WP_015428897.1 565253..566773(+) (comM) [Helicobacter pylori OK310]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQWVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=46368 HPOK310_RS02805 WP_015428897.1 565253..566773(+) (comM) [Helicobacter pylori OK310]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAACTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCACCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGTAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGCACCTAAGGCTAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGTGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTGAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCAAGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATGGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAACATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.036

100

0.97
  comM Acinetobacter baylyi ADP1

36.204

100

0.366