Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JNN58_RS20750 Genome accession   NZ_CP068827
Coordinates   4349230..4349835 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain RIVM_C030371     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4344230..4354835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN58_RS20720 (JNN58_20720) rsmS 4344932..4345096 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  JNN58_RS20725 (JNN58_20725) priC 4345110..4345637 (-) 528 WP_202845718.1 primosomal replication protein N'' -
  JNN58_RS20730 (JNN58_20730) ybaN 4345707..4346084 (+) 378 WP_001188905.1 DUF454 family protein -
  JNN58_RS20735 (JNN58_20735) apt 4346237..4346788 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  JNN58_RS20740 (JNN58_20740) dnaX 4346917..4348848 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  JNN58_RS20745 (JNN58_20745) ybaB 4348901..4349230 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  JNN58_RS20750 (JNN58_20750) recR 4349230..4349835 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  JNN58_RS20755 (JNN58_20755) htpG 4349945..4351819 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  JNN58_RS20760 (JNN58_20760) adk 4352000..4352644 (+) 645 WP_001220233.1 adenylate kinase -
  JNN58_RS20765 (JNN58_20765) hemH 4352776..4353738 (+) 963 WP_001250117.1 ferrochelatase -
  JNN58_RS20770 (JNN58_20770) aes 4353735..4354694 (-) 960 WP_000764314.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=463675 JNN58_RS20750 WP_001195025.1 4349230..4349835(+) (recR) [Escherichia coli strain RIVM_C030371]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=463675 JNN58_RS20750 WP_001195025.1 4349230..4349835(+) (recR) [Escherichia coli strain RIVM_C030371]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443