Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   VY92_RS03075 Genome accession   NZ_CP058307
Coordinates   603728..606187 (+) Length   819 a.a.
NCBI ID   WP_046097448.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598728..611187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS03055 (VY92_003060) - 599729..600949 (-) 1221 WP_035685750.1 NRAMP family divalent metal transporter -
  VY92_RS03060 (VY92_003065) thiE 600950..601612 (-) 663 WP_035685748.1 thiamine phosphate synthase -
  VY92_RS03065 (VY92_003070) thiD 601605..602423 (-) 819 WP_035685746.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VY92_RS03070 (VY92_003075) thiM 602435..603238 (-) 804 WP_035685744.1 hydroxyethylthiazole kinase -
  VY92_RS03075 (VY92_003080) rec2 603728..606187 (+) 2460 WP_046097448.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VY92_RS03080 (VY92_003085) msbA 606406..608154 (+) 1749 WP_035685742.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VY92_RS03085 (VY92_003090) lpxK 608170..609180 (+) 1011 WP_035685740.1 tetraacyldisaccharide 4'-kinase -
  VY92_RS03090 (VY92_003095) - 609343..609525 (+) 183 WP_035685738.1 Trm112 family protein -
  VY92_RS03095 (VY92_003100) kdsB 609522..610304 (+) 783 WP_035685736.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 819 a.a.        Molecular weight: 92092.56 Da        Isoelectric Point: 9.8729

>NTDB_id=463629 VY92_RS03075 WP_046097448.1 603728..606187(+) (rec2) [Avibacterium paragallinarum strain AVPG2015]
MGLRLDTLLWLVIAAGLTLLFVPQSFLLEPKQSAWLAGITVVGCGVAYWIKRQGLAKFFAYGAIFVLCLADFHYQAQQLL
QQAHAVAGLEKRIEREIRIVEVLHQQDYQTLIATAQLDETLPEQRLYVQWQRAEKVAVGQRWRAELSLRPLSSRLNEGGF
DRQKWYFSKGITAYARVKSAVKISEDFSWREARLQTAFQHTQALSMQGLLLALGFGERAWLQPTHWQIYQKTNTAHLIAI
SGLHIGLAMLLGVGIARGIQFCLPTYWITPMFPLFIGAIIALIYAYLAGFSIPTLRALVALGLVCLVRGLRFYHTPWQYF
QRVVAVLIFCQPLMVLSVSFWLSVGAVASLILWYQYVPLDLFQPRTDLVRQDRPFSLGAIIGKLILRWCVALLHLQLGLL
LVFTPVQLYFFHGFSLAGMIANVFAVPLFSFFLVPLVLFAVLSNGTFSSWQGANELAEKITVFLSNWQHKWIDLSQTQSQ
WIGLGLCALGLSYVFGLWQVQKNHSLNRQKSIPFVQDRTLAKWKWRLNPDKIPSVLCLKKLGVVLVLIFLVNGGNLLVTH
FRQPAWRLETLDVGQGLATLIVKNQRGILYDTGAAWRGGSMAELEILPYLRRQGIVLDYLILSHDDNDHAGGAEAVLRAY
PNATLITSSEKIERKTHRTSCFAGTQWQWQGLQISALSPQKVVKRAENNDSCVLLIDDGRHKVLLTGDAESQIEPQFIYK
AGKIDVLQVGHHGSKTSTSEALVKTLQPSIALISSGRGNPWHFPHYAVLARLQAQQSAVLNTADFGQILLSFSAKKPPPE
NISIDTARGTFSPWYRELL

Nucleotide


Download         Length: 2460 bp        

>NTDB_id=463629 VY92_RS03075 WP_046097448.1 603728..606187(+) (rec2) [Avibacterium paragallinarum strain AVPG2015]
ATTGGCCTGAGGCTCGATACCCTGTTATGGCTTGTGATCGCCGCGGGCTTAACCTTGCTTTTTGTGCCGCAATCTTTTTT
GCTTGAGCCAAAGCAAAGTGCGTGGCTGGCGGGGATTACGGTGGTGGGCTGTGGCGTTGCCTATTGGATTAAGCGTCAAG
GACTAGCGAAATTTTTCGCCTATGGTGCGATATTTGTGCTATGCCTTGCGGATTTTCATTATCAGGCACAGCAGCTCTTA
CAGCAGGCTCACGCCGTTGCGGGGCTTGAAAAACGCATTGAGCGGGAAATTCGCATTGTCGAAGTACTACATCAGCAAGA
TTATCAAACCCTTATCGCCACCGCTCAGCTTGATGAAACCCTGCCTGAACAACGCCTTTATGTGCAATGGCAAAGGGCGG
AAAAAGTGGCTGTCGGACAGCGTTGGCGAGCGGAATTATCCCTACGTCCATTGTCTAGTCGGCTAAATGAGGGGGGATTT
GATCGGCAAAAATGGTATTTTTCAAAGGGGATTACCGCCTATGCAAGGGTGAAAAGTGCGGTCAAAATTTCGGAAGATTT
TTCTTGGCGGGAAGCAAGGTTACAAACCGCATTTCAGCACACTCAAGCCCTCTCAATGCAAGGGCTATTGCTGGCGTTAG
GATTTGGTGAACGGGCGTGGTTGCAGCCAACTCATTGGCAAATCTACCAAAAAACCAATACCGCTCATCTTATCGCTATT
TCAGGGCTACATATTGGCTTGGCAATGTTGCTTGGCGTTGGCATTGCTCGAGGGATACAATTTTGCTTGCCGACCTATTG
GATCACGCCGATGTTTCCGCTTTTTATTGGGGCAATAATCGCGTTGATTTATGCCTATTTAGCGGGATTTTCTATTCCCA
CCCTGCGGGCGTTGGTAGCATTGGGGCTAGTGTGTTTAGTGCGAGGGTTGCGTTTTTATCACACCCCTTGGCAATATTTT
CAGCGGGTGGTAGCAGTGCTGATTTTCTGCCAGCCGTTAATGGTGCTATCGGTGAGTTTTTGGCTATCAGTAGGGGCGGT
AGCAAGTTTGATTTTATGGTATCAATATGTGCCGTTGGATTTGTTTCAGCCACGAACTGATTTAGTCAGGCAGGATCGCC
CGTTCTCTTTAGGGGCAATAATCGGTAAGCTCATACTACGCTGGTGCGTAGCATTGTTGCATTTGCAACTGGGCTTATTG
TTAGTGTTTACCCCCGTTCAGCTTTACTTTTTTCACGGTTTTTCTTTAGCGGGAATGATCGCGAATGTTTTTGCTGTACC
GTTGTTCAGCTTTTTTCTTGTTCCGCTCGTGCTATTTGCGGTACTCAGTAACGGCACATTTTCTTCTTGGCAAGGAGCAA
ATGAATTGGCAGAAAAGATCACCGTTTTTCTGTCAAATTGGCAACATAAATGGATCGATCTTTCCCAAACGCAATCGCAA
TGGATCGGGCTTGGGCTGTGTGCATTGGGGCTGAGCTATGTTTTTGGCTTATGGCAGGTACAGAAAAATCACTCGCTGAA
TAGGCAAAAATCCATTCCGTTCGTTCAGGATCGCACTTTGGCAAAATGGAAATGGAGGTTAAACCCTGACAAAATCCCCT
CAGTATTATGCTTAAAAAAGCTAGGTGTTGTACTGGTGCTTATTTTTCTCGTCAATGGCGGAAATTTGTTGGTAACCCAT
TTTCGGCAACCCGCTTGGCGGCTTGAAACCCTTGATGTGGGGCAGGGGCTTGCCACCTTGATCGTGAAAAATCAGCGTGG
CATTTTATATGATACGGGCGCAGCCTGGCGTGGCGGAAGTATGGCAGAATTAGAAATTTTGCCTTATTTACGGCGGCAGG
GTATTGTGCTGGATTACCTTATTTTAAGCCACGACGACAATGATCACGCAGGCGGGGCTGAAGCGGTGTTGCGGGCTTAT
CCCAATGCGACGCTCATTACGTCATCGGAAAAAATCGAGCGAAAAACGCACCGCACTTCTTGTTTCGCGGGAACGCAATG
GCAGTGGCAAGGGTTGCAGATTTCAGCCCTTTCACCGCAAAAGGTGGTGAAACGAGCGGAAAATAATGATTCGTGCGTGC
TGTTGATCGATGATGGGCGGCATAAAGTGTTGCTCACAGGCGACGCGGAAAGCCAAATTGAACCACAGTTTATTTACAAG
GCAGGGAAAATTGACGTGTTACAGGTCGGACATCACGGCAGCAAAACCTCTACCAGCGAGGCATTGGTGAAAACCTTGCA
ACCTAGCATTGCGTTGATTTCTAGTGGACGGGGAAACCCTTGGCATTTCCCGCATTACGCGGTGTTAGCACGTTTGCAAG
CACAGCAAAGTGCGGTGTTAAATACGGCAGATTTTGGACAAATTCTCCTTTCTTTTTCAGCCAAGAAACCACCGCCTGAA
AATATCAGCATTGACACCGCACGGGGAACGTTTTCCCCTTGGTATCGGGAATTATTGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-495)

Metallo-beta-lactamase superfamily (Lactamase_B)

(572-754)

Domain of unknown function (DUF4131) (DUF4131)

(33-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

53.072

93.407

0.496