Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUU85_RS19500 Genome accession   NZ_CP058302
Coordinates   4103386..4104015 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AH65     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4098386..4109015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUU85_RS19480 (HUU85_19510) ycbZ 4098787..4100547 (-) 1761 WP_000156518.1 Lon protease family protein -
  HUU85_RS19485 (HUU85_19515) matP 4100733..4101185 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUU85_RS19490 (HUU85_19520) ompA 4101261..4102301 (-) 1041 WP_000750416.1 porin OmpA -
  HUU85_RS19495 (HUU85_19525) sulA 4102658..4103167 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  HUU85_RS19500 (HUU85_19530) sxy/tfoX 4103386..4104015 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUU85_RS19505 (HUU85_19535) yccS 4103978..4106140 (-) 2163 WP_000875061.1 YccS family putative transporter -
  HUU85_RS19510 (HUU85_19540) yccF 4106150..4106596 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HUU85_RS19515 (HUU85_19545) helD 4106719..4108773 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=463611 HUU85_RS19500 WP_000839153.1 4103386..4104015(+) (sxy/tfoX) [Escherichia coli strain AH65]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=463611 HUU85_RS19500 WP_000839153.1 4103386..4104015(+) (sxy/tfoX) [Escherichia coli strain AH65]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1