Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   HX738_RS05165 Genome accession   NZ_CP058299
Coordinates   1007822..1008553 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain A9a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1002822..1013553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX738_RS05135 (HX738_05135) rpsF 1002967..1003344 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  HX738_RS05140 (HX738_05140) ssb 1003353..1003904 (+) 552 WP_002853013.1 single-stranded DNA-binding protein -
  HX738_RS05145 (HX738_05145) rpsR 1003915..1004175 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  HX738_RS05150 (HX738_05150) lon 1004235..1006610 (-) 2376 WP_002852988.1 endopeptidase La -
  HX738_RS05155 (HX738_05155) - 1006627..1007274 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  HX738_RS05160 (HX738_05160) fliW 1007433..1007822 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  HX738_RS05165 (HX738_05165) proC 1007822..1008553 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  HX738_RS05170 (HX738_05170) ctsT 1008550..1008852 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  HX738_RS05175 (HX738_05175) - 1008849..1009511 (+) 663 WP_002859149.1 hypothetical protein -
  HX738_RS05180 (HX738_05180) - 1009508..1009960 (+) 453 WP_177640540.1 hypothetical protein -
  HX738_RS05185 (HX738_05185) hemD 1009957..1010586 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  HX738_RS05190 (HX738_05190) thiE 1010564..1011196 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  HX738_RS05195 (HX738_05195) thiD 1011186..1011998 (-) 813 WP_002899485.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HX738_RS05200 (HX738_05200) - 1011995..1012681 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  HX738_RS05205 (HX738_05205) - 1012678..1013439 (-) 762 WP_177640541.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=463565 HX738_RS05165 WP_002859150.1 1007822..1008553(+) (proC) [Campylobacter jejuni strain A9a]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=463565 HX738_RS05165 WP_002859150.1 1007822..1008553(+) (proC) [Campylobacter jejuni strain A9a]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAGCATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGTATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996