Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HX740_RS05545 Genome accession   NZ_CP058293
Coordinates   1083812..1084765 (+) Length   317 a.a.
NCBI ID   WP_002869014.1    Uniprot ID   A0A5Y9JB79
Organism   Campylobacter jejuni strain D33a     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078812..1089765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX740_RS05515 (HX740_05510) neuC 1079389..1080513 (+) 1125 WP_002869019.1 UDP-N-acetylglucosamine 2-epimerase -
  HX740_RS05520 (HX740_05515) - 1080506..1081048 (+) 543 Protein_1070 beta-1,4-N-acetylgalactosaminyltransferase -
  HX740_RS05525 (HX740_05520) - 1081120..1081452 (+) 333 WP_019260376.1 hypothetical protein -
  HX740_RS05530 (HX740_05525) - 1081449..1082114 (+) 666 WP_002869017.1 acylneuraminate cytidylyltransferase family protein -
  HX740_RS08715 (HX740_05530) - 1082102..1082845 (+) 744 WP_002869016.1 CatB-related O-acetyltransferase -
  HX740_RS05540 (HX740_05535) - 1082926..1083753 (-) 828 WP_002869015.1 glycosyltransferase family 2 protein -
  HX740_RS05545 (HX740_05540) waaF 1083812..1084765 (+) 954 WP_002869014.1 lipopolysaccharide heptosyltransferase II Regulator
  HX740_RS05550 (HX740_05545) - 1084772..1085527 (-) 756 WP_002869013.1 glycosyltransferase family 25 protein -
  HX740_RS05555 (HX740_05550) gmhA 1085527..1086087 (-) 561 WP_002869012.1 D-sedoheptulose 7-phosphate isomerase -
  HX740_RS05560 (HX740_05555) rfaE1 1086084..1087469 (-) 1386 WP_002869011.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  HX740_RS05565 (HX740_05560) rfaD 1087462..1088415 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  HX740_RS05570 (HX740_05565) gmhB 1088416..1088976 (-) 561 WP_002869010.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  HX740_RS05575 (HX740_05570) - 1089058..1089360 (+) 303 WP_002852762.1 cytochrome c -
  HX740_RS05580 (HX740_05575) ccoS 1089383..1089589 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36457.07 Da        Isoelectric Point: 10.2322

>NTDB_id=463541 HX740_RS05545 WP_002869014.1 1083812..1084765(+) (waaF) [Campylobacter jejuni strain D33a]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=463541 HX740_RS05545 WP_002869014.1 1083812..1084765(+) (waaF) [Campylobacter jejuni strain D33a]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTACATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y9JB79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.586

99.054

0.937