Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JNN79_RS21185 Genome accession   NZ_CP068825
Coordinates   4388294..4388761 (+) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C030256     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4383294..4393761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN79_RS21140 (JNN79_21140) rplP 4383404..4383814 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  JNN79_RS21145 (JNN79_21145) rpsC 4383827..4384528 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  JNN79_RS21150 (JNN79_21150) rplV 4384546..4384878 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  JNN79_RS21155 (JNN79_21155) rpsS 4384893..4385171 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  JNN79_RS21160 (JNN79_21160) rplB 4385188..4386009 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  JNN79_RS21165 (JNN79_21165) rplW 4386027..4386329 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  JNN79_RS21170 (JNN79_21170) rplD 4386326..4386931 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  JNN79_RS21175 (JNN79_21175) rplC 4386942..4387571 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  JNN79_RS21180 (JNN79_21180) rpsJ 4387604..4387915 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  JNN79_RS21185 (JNN79_21185) pilD 4388294..4388761 (+) 468 WP_000338336.1 A24 family peptidase Machinery gene
  JNN79_RS21190 (JNN79_21190) bfr 4388758..4389234 (-) 477 WP_000675515.1 bacterioferritin -
  JNN79_RS21195 (JNN79_21195) bfd 4389307..4389501 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JNN79_RS21200 (JNN79_21200) tuf 4389684..4390868 (-) 1185 WP_000031783.1 elongation factor Tu -
  JNN79_RS21205 (JNN79_21205) fusA 4390939..4393053 (-) 2115 WP_000124703.1 elongation factor G -
  JNN79_RS21210 (JNN79_21210) rpsG 4393150..4393620 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=463496 JNN79_RS21185 WP_000338336.1 4388294..4388761(+) (pilD) [Escherichia coli strain RIVM_C030256]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=463496 JNN79_RS21185 WP_000338336.1 4388294..4388761(+) (pilD) [Escherichia coli strain RIVM_C030256]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368