Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HWU09_RS02105 Genome accession   NZ_CP058287
Coordinates   433075..433479 (+) Length   134 a.a.
NCBI ID   WP_180603183.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 428075..438479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU09_RS02070 - 428254..429192 (-) 939 WP_237003694.1 tetraacyldisaccharide 4'-kinase -
  HWU09_RS02075 - 429189..429971 (-) 783 WP_237003695.1 NAD+ synthase -
  HWU09_RS02085 ilvC 430214..431206 (+) 993 WP_237003696.1 ketol-acid reductoisomerase -
  HWU09_RS02090 minD 431230..432036 (+) 807 WP_237003697.1 septum site-determining protein MinD -
  HWU09_RS02095 minE 432033..432266 (+) 234 WP_000051428.1 cell division topological specificity factor MinE -
  HWU09_RS02100 dprA 432278..433078 (+) 801 WP_058337826.1 DNA-processing protein DprA Machinery gene
  HWU09_RS02105 dprB 433075..433479 (+) 405 WP_180603183.1 Holliday junction resolvase RuvX Machinery gene
  HWU09_RS02110 - 433609..434073 (+) 465 WP_237003698.1 tetratricopeptide repeat protein -
  HWU09_RS02115 - 434226..434957 (+) 732 WP_272905076.1 tetratricopeptide repeat protein -
  HWU09_RS02120 - 435151..435489 (+) 339 WP_237003699.1 hypothetical protein -
  HWU09_RS02125 - 435473..436033 (+) 561 WP_237003700.1 hypothetical protein -
  HWU09_RS02130 - 436062..436724 (+) 663 WP_336885763.1 glycoside hydrolase family protein -
  HWU09_RS02135 - 436921..437499 (+) 579 WP_419772987.1 IS607 family transposase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15256.74 Da        Isoelectric Point: 9.1716

>NTDB_id=463466 HWU09_RS02105 WP_180603183.1 433075..433479(+) (dprB) [Helicobacter pylori strain AL04]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=463466 HWU09_RS02105 WP_180603183.1 433075..433479(+) (dprB) [Helicobacter pylori strain AL04]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.992

99.254

0.963