Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SAA6159_RS07980 Genome accession   NC_017338
Coordinates   1666971..1667657 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1661971..1672657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS07960 (SAA6159_01521) rpsT 1662885..1663136 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SAA6159_RS07965 (SAA6159_01522) holA 1663181..1664155 (-) 975 WP_001282574.1 DNA polymerase III subunit delta -
  SAA6159_RS07970 (SAA6159_01523) comEC 1664212..1666413 (-) 2202 WP_044025908.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SAA6159_RS07975 (SAA6159_01524) - 1666418..1666879 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SAA6159_RS07980 (SAA6159_01525) comEA 1666971..1667657 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  SAA6159_RS07985 (SAA6159_01526) - 1667697..1668413 (-) 717 WP_000084826.1 class I SAM-dependent methyltransferase -
  SAA6159_RS07990 (SAA6159_01527) rsfS 1668416..1668769 (-) 354 WP_001088020.1 ribosome silencing factor -
  SAA6159_RS07995 (SAA6159_01528) yqeK 1668770..1669354 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SAA6159_RS08000 (SAA6159_01529) nadD 1669344..1669913 (-) 570 WP_000725159.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SAA6159_RS08005 (SAA6159_01530) yhbY 1669916..1670206 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  SAA6159_RS08010 (SAA6159_01531) aroE 1670210..1671016 (-) 807 WP_000666756.1 shikimate dehydrogenase -
  SAA6159_RS08015 (SAA6159_01532) yqeH 1671030..1672130 (-) 1101 WP_001280149.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=46346 SAA6159_RS07980 WP_078055782.1 1666971..1667657(-) (comEA) [Staphylococcus aureus subsp. aureus JKD6159]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=46346 SAA6159_RS07980 WP_078055782.1 1666971..1667657(-) (comEA) [Staphylococcus aureus subsp. aureus JKD6159]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACGAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982

Multiple sequence alignment