Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CQZ96_RS15420 Genome accession   NZ_CP058272
Coordinates   3314704..3316929 (-) Length   741 a.a.
NCBI ID   WP_105713854.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3309704..3321929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS15400 (CQZ96_015430) - 3309876..3310214 (-) 339 WP_004725521.1 chaperone modulator CbpM -
  CQZ96_RS15405 (CQZ96_015435) - 3310256..3311224 (-) 969 WP_056517643.1 DnaJ C-terminal domain-containing protein -
  CQZ96_RS15410 (CQZ96_015440) - 3311572..3312447 (-) 876 WP_004725526.1 Hsp33 family molecular chaperone HslO -
  CQZ96_RS15415 (CQZ96_015445) - 3312531..3314426 (-) 1896 WP_105713853.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  CQZ96_RS15420 (CQZ96_015450) priA 3314704..3316929 (-) 2226 WP_105713854.1 primosomal protein N' Machinery gene
  CQZ96_RS15425 (CQZ96_015455) gspF 3317098..3318303 (+) 1206 WP_004725548.1 type II secretion system inner membrane protein GspF -
  CQZ96_RS15430 (CQZ96_015460) gspG 3318343..3318780 (+) 438 WP_004725550.1 type II secretion system major pseudopilin GspG -
  CQZ96_RS15435 (CQZ96_015465) - 3319050..3319385 (+) 336 WP_004725552.1 hypothetical protein -
  CQZ96_RS15440 (CQZ96_015470) - 3319462..3319725 (-) 264 WP_034617824.1 DUF2798 domain-containing protein -
  CQZ96_RS15445 (CQZ96_015475) - 3320075..3320413 (+) 339 WP_105713855.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84269.61 Da        Isoelectric Point: 8.7885

>NTDB_id=463370 CQZ96_RS15420 WP_105713854.1 3314704..3316929(-) (priA) [Acinetobacter sp. MYb10]
MSNTLATPQTIYRIQVAVPVYLNDCFDYQVTAEQYAQAEVGARVAVSFGRQNLIGVIVKKVPIDEPVDSHFKLKAITELL
DEQAILDSKVLSLLTWSSQYYQFPIGEVIQTALPTLLRQGKPYNLLARIWKLLDLHAEDKVKRSEKQQEAYKILKLHPKG
TQENILNLSGVETATLKVLEKKDIVHCDLEPQNVTPEPVQLAQMPLTPNDDQKKAIQAILKAQKKYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDTKRLQAWQHAQTGKASIILGTRSAIYTPL
PHLGLIILDEEHDLSFKQQEGFRYHARDVAMYRAHLENCPIILGSATPSIDSYYLARQEKLTRIELNQRAGAAIMPKMHL
IDLKVAKKQHGLSDVLIAEIKKRLEKKEQVLIFLNRRGYAPVLICESCGWQANCPNCDAHFTLHLKPYQHLHCHHCGTIN
RMPDACPQCNQQQLKPIGMGTAKVEETLNELFPHFPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDFRATERTAQLIIQVAGRAGRGEMKGEVYLQTLRPDHPLLNTLIHNDYRTFAKQTLKDRQAALL
PPFRYTALIRCDSKHQEENLKFLTEMTQLLRQTAEENLIDIWGPIPAPMERKAGRYQAHVVLLSQDRAKMHFYIRQWWQQ
LLHSKPSTMKVTIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=463370 CQZ96_RS15420 WP_105713854.1 3314704..3316929(-) (priA) [Acinetobacter sp. MYb10]
ATGTCGAATACCCTTGCTACGCCACAGACGATTTATCGTATTCAAGTTGCTGTTCCAGTCTATTTGAATGACTGCTTTGA
TTACCAAGTCACCGCTGAACAATATGCGCAAGCTGAAGTCGGTGCGCGTGTTGCAGTGTCTTTTGGCAGACAAAATCTGA
TTGGTGTTATTGTCAAGAAAGTACCGATTGATGAACCTGTGGATTCTCATTTTAAACTCAAAGCCATTACTGAACTGTTA
GATGAACAGGCCATTCTAGACAGTAAAGTTTTAAGTTTATTGACATGGTCATCACAATATTATCAATTTCCTATCGGTGA
AGTGATTCAAACGGCGTTACCTACCTTATTACGCCAAGGTAAACCTTATAATTTATTGGCACGTATCTGGAAACTTTTAG
ACTTACATGCCGAAGACAAAGTTAAGCGTTCTGAAAAACAACAAGAAGCCTATAAAATTTTAAAGCTACACCCGAAAGGG
ACACAGGAAAACATTCTTAATTTAAGTGGTGTTGAAACAGCCACACTCAAAGTCCTTGAGAAAAAAGACATTGTTCATTG
TGATTTAGAACCACAAAATGTCACGCCAGAACCTGTGCAATTGGCACAGATGCCACTCACGCCAAATGACGATCAGAAGA
AAGCCATTCAAGCGATTTTAAAAGCGCAAAAAAAATATCAAGCGTTTCTACTGGATGGTTTAACTGGGAGTGGTAAAACC
GAAGTTTATTTGCAAGTGATGCATGAAGTACTTAAACAAGGCAAACAAGTTCTGGTTTTAGTGCCTGAAATTGGCTTAAC
CCCACAAACCATCAGCCGTTTCCAATCACGTTTTCATTGCAATATTGCCTTACTACATTCAGGGTTAAATGACACTAAAC
GTTTACAAGCATGGCAGCATGCGCAAACGGGCAAAGCCTCTATTATTTTAGGTACACGTTCTGCAATTTATACGCCTTTG
CCGCATTTGGGTTTGATTATTTTAGATGAAGAGCATGATCTTTCGTTTAAACAGCAAGAAGGCTTCCGCTATCATGCTCG
CGATGTGGCCATGTATCGTGCACATTTAGAAAATTGCCCGATTATTTTAGGTTCGGCCACACCAAGCATCGACAGTTATT
ATCTTGCTCGCCAAGAAAAGCTGACACGGATTGAGTTAAATCAACGTGCTGGTGCCGCAATCATGCCGAAAATGCATTTG
ATTGATTTAAAAGTGGCAAAAAAACAGCATGGCTTAAGTGATGTTTTGATTGCTGAAATCAAAAAACGTTTAGAGAAAAA
AGAACAAGTTCTGATTTTTTTAAATCGCCGCGGTTATGCCCCTGTGCTTATCTGTGAAAGCTGTGGTTGGCAGGCCAATT
GCCCCAACTGCGATGCTCACTTTACCCTGCATTTAAAGCCTTATCAGCATTTACATTGTCACCATTGTGGCACGATTAAT
CGTATGCCTGATGCTTGCCCTCAATGCAATCAACAACAATTAAAGCCAATTGGCATGGGAACTGCCAAAGTTGAAGAAAC
CTTGAATGAGCTGTTCCCTCACTTCCCCGTCTTGCGCGTAGATCGTGACTCAACCAGTCGGGTTGGTAGTTGGCAAAAGA
TTTATGATCAAATCCAAAAAAGTGAACCGACCATTTTACTTGGCACTCAAATGCTGGCAAAAGGACATCACTTTCCTTAT
GTCACCTTAGTGGCAATTTTGGATATTGATGCAGGTTTGTTGAGTGTGGATTTCCGTGCCACAGAACGTACTGCGCAATT
AATTATTCAAGTTGCAGGTCGTGCGGGTCGTGGTGAAATGAAGGGTGAAGTCTATTTACAAACCCTAAGACCGGATCATC
CGTTATTAAACACCTTGATTCATAATGACTATCGGACCTTTGCCAAACAAACCTTAAAAGATCGCCAAGCCGCACTACTT
CCACCCTTTCGTTATACAGCTTTGATCCGTTGTGATTCAAAGCATCAGGAAGAAAATTTAAAGTTTTTGACTGAAATGAC
GCAGCTCCTTAGACAAACTGCTGAAGAGAATTTAATTGATATTTGGGGACCGATTCCAGCTCCGATGGAGCGTAAAGCAG
GTCGTTACCAAGCCCATGTGGTTTTGCTTTCTCAAGATCGGGCAAAAATGCATTTTTATATTCGTCAATGGTGGCAACAG
CTGTTACATAGCAAACCCTCTACGATGAAAGTCACCATAGATGTTGATCCGCAAGAGTTGAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.275

100

0.725