Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPOK113_RS05865 Genome accession   NC_020508
Coordinates   1229455..1230525 (+) Length   356 a.a.
NCBI ID   WP_015428191.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224455..1235525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS05845 (HPOK113_1145) - 1224559..1225302 (+) 744 WP_002205282.1 carbonic anhydrase -
  HPOK113_RS05850 (HPOK113_1146) - 1225530..1226606 (-) 1077 WP_015428188.1 DUF874 family protein -
  HPOK113_RS05855 (HPOK113_1147) asd 1227038..1228078 (-) 1041 WP_015428189.1 aspartate-semialdehyde dehydrogenase -
  HPOK113_RS05860 (HPOK113_1148) hisS 1228065..1229393 (-) 1329 WP_015428190.1 histidine--tRNA ligase -
  HPOK113_RS05865 (HPOK113_1149) waaF 1229455..1230525 (+) 1071 WP_015428191.1 lipopolysaccharide heptosyltransferase II Regulator
  HPOK113_RS05870 (HPOK113_1150) - 1230698..1231024 (-) 327 WP_000744162.1 hypothetical protein -
  HPOK113_RS05880 (HPOK113_1151) fusA 1231565..1233643 (-) 2079 WP_000101840.1 elongation factor G -
  HPOK113_RS05885 (HPOK113_1152) rpsG 1233655..1234122 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPOK113_RS05890 (HPOK113_1153) rpsL 1234138..1234545 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40304.29 Da        Isoelectric Point: 9.6618

>NTDB_id=46337 HPOK113_RS05865 WP_015428191.1 1229455..1230525(+) (waaF) [Helicobacter pylori OK113]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKPKRLLCAF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=46337 HPOK113_RS05865 WP_015428191.1 1229455..1230525(+) (waaF) [Helicobacter pylori OK113]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAGGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATTGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTATTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCCCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTGAAAGCCGCTCACACTCTTTTAGA
AAAGCCTAAACGCCTTTTATGTGCTTTTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.572

97.191

0.365

Multiple sequence alignment