Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   CQZ96_RS12485 Genome accession   NZ_CP058272
Coordinates   2675319..2675645 (-) Length   108 a.a.
NCBI ID   WP_004718506.1    Uniprot ID   A0A077KSH9
Organism   Acinetobacter sp. MYb10     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2670319..2680645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS12465 (CQZ96_012495) - 2670372..2671094 (-) 723 WP_105713861.1 FHA domain-containing protein -
  CQZ96_RS12470 (CQZ96_012500) gspD 2671279..2673525 (-) 2247 WP_105713862.1 type II secretion system secretin GspD -
  CQZ96_RS12475 (CQZ96_012505) - 2673567..2674412 (-) 846 WP_105713863.1 type II secretion system protein N -
  CQZ96_RS12480 (CQZ96_012510) gspN 2674412..2675155 (-) 744 WP_105713864.1 type II secretion system protein N -
  CQZ96_RS12485 (CQZ96_012515) hns 2675319..2675645 (-) 327 WP_004718506.1 H-NS family nucleoid-associated regulatory protein Regulator
  CQZ96_RS12490 (CQZ96_012520) - 2675871..2676308 (-) 438 WP_004718508.1 acyl-CoA thioesterase -
  CQZ96_RS12495 (CQZ96_012525) - 2676318..2677511 (-) 1194 WP_105713865.1 hypothetical protein -
  CQZ96_RS12500 (CQZ96_012530) - 2677516..2678346 (-) 831 WP_105713866.1 hypothetical protein -
  CQZ96_RS12505 (CQZ96_012535) - 2678343..2679125 (-) 783 WP_105713867.1 uroporphyrinogen-III synthase -
  CQZ96_RS12510 (CQZ96_012540) hemC 2679139..2680062 (-) 924 WP_218619758.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.15 Da        Isoelectric Point: 8.4038

>NTDB_id=463358 CQZ96_RS12485 WP_004718506.1 2675319..2675645(-) (hns) [Acinetobacter sp. MYb10]
MMPDISNLSVEELRKLTAEAEALIESKKDQAVEDAYNKIIEIAQSAGLTLEQFIEYGAQKRKKTTRKAVEPRYRNKKDTS
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=463358 CQZ96_RS12485 WP_004718506.1 2675319..2675645(-) (hns) [Acinetobacter sp. MYb10]
ATGATGCCTGATATTAGTAATTTATCGGTTGAAGAGTTAAGAAAGTTAACAGCTGAAGCAGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAGTTGAAGATGCCTATAATAAAATTATTGAAATTGCGCAATCTGCTGGTTTAACTTTAGAACAGTTTA
TTGAATACGGCGCGCAAAAGCGTAAAAAGACAACGCGTAAAGCTGTTGAGCCGCGTTACCGCAATAAAAAAGATACTTCT
GAAACTTGGACTGGACGCGGTAAACAACCACGTTGGTTGGTTGCAGAAATCGAAAAAGGTGCAAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077KSH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787