Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   CQZ96_RS03890 Genome accession   NZ_CP058272
Coordinates   811238..811621 (-) Length   127 a.a.
NCBI ID   WP_105712766.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806238..816621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS03860 (CQZ96_003860) tadA 806311..806835 (-) 525 WP_056510868.1 tRNA adenosine(34) deaminase TadA -
  CQZ96_RS03865 (CQZ96_003865) - 806842..807963 (-) 1122 WP_004720808.1 enoyl-CoA hydratase/isomerase family protein -
  CQZ96_RS03870 (CQZ96_003870) ung 807960..808673 (-) 714 WP_105712763.1 uracil-DNA glycosylase -
  CQZ96_RS03875 (CQZ96_003875) - 808748..809344 (-) 597 WP_004720811.1 6-pyruvoyl trahydropterin synthase family protein -
  CQZ96_RS03880 (CQZ96_003880) gspK 809578..810534 (-) 957 WP_105712764.1 type II secretion system minor pseudopilin GspK -
  CQZ96_RS03885 (CQZ96_003885) xcpW 810582..811238 (-) 657 WP_105712765.1 type II secretion system minor pseudopilin GspJ Machinery gene
  CQZ96_RS03890 (CQZ96_003890) xcpV 811238..811621 (-) 384 WP_105712766.1 type II secretion system minor pseudopilin GspI Machinery gene
  CQZ96_RS03895 (CQZ96_003895) - 811608..812174 (-) 567 WP_105712767.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CQZ96_RS03900 (CQZ96_003900) - 812180..812794 (-) 615 WP_105712768.1 TetR/AcrR family transcriptional regulator -
  CQZ96_RS03905 (CQZ96_003905) - 812882..813655 (-) 774 WP_004720827.1 TatD family hydrolase -
  CQZ96_RS03910 (CQZ96_003910) - 813683..814024 (-) 342 WP_004720833.1 PilZ domain-containing protein -
  CQZ96_RS03915 (CQZ96_003915) - 814051..815031 (-) 981 WP_004720835.1 DNA polymerase III, delta' subunit -
  CQZ96_RS03920 (CQZ96_003920) kdsB 815099..815860 (-) 762 WP_105712769.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14122.46 Da        Isoelectric Point: 10.0997

>NTDB_id=463343 CQZ96_RS03890 WP_105712766.1 811238..811621(-) (xcpV) [Acinetobacter sp. MYb10]
MKKNKGFTLIEVVVALAIFAVAAMALTKVAMQYTQSTANAILRTKAQFVAQNEISMMMINREWLSGTSSKQITTQGETWQ
VDKKVESTLSPNVQKIDVQVSLFNPDTGKVEAGITNMVFFNYPIKEK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=463343 CQZ96_RS03890 WP_105712766.1 811238..811621(-) (xcpV) [Acinetobacter sp. MYb10]
ATGAAGAAAAATAAGGGCTTTACTTTAATTGAGGTGGTTGTGGCTTTGGCGATTTTTGCAGTCGCAGCAATGGCTTTGAC
TAAAGTCGCGATGCAATATACGCAGTCGACAGCCAACGCGATTTTACGAACCAAAGCTCAGTTTGTTGCACAGAATGAAA
TCTCAATGATGATGATTAATCGTGAATGGCTGTCAGGAACATCATCCAAACAAATCACCACACAAGGTGAAACTTGGCAG
GTAGATAAAAAAGTAGAATCTACACTGAGCCCAAATGTACAAAAAATAGATGTGCAAGTGAGCCTTTTTAATCCTGATAC
GGGCAAAGTAGAAGCAGGGATTACCAATATGGTGTTCTTTAATTATCCGATCAAAGAAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(43-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

77.6

98.425

0.764