Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN66_RS14280 Genome accession   NZ_CP068823
Coordinates   3014893..3016320 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C029494     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3009893..3021320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN66_RS14250 (JNN66_14250) pduU 3010270..3010620 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  JNN66_RS14255 (JNN66_14255) - 3010625..3011068 (+) 444 WP_001189438.1 EutP/PduV family microcompartment system protein -
  JNN66_RS14260 (JNN66_14260) tmaR 3011169..3011498 (-) 330 WP_000450409.1 DUF496 family protein -
  JNN66_RS14265 (JNN66_14265) yeeA 3011670..3012728 (-) 1059 WP_001200892.1 FUSC family protein -
  JNN66_RS14270 (JNN66_14270) sbmC 3012926..3013399 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  JNN66_RS14275 (JNN66_14275) dacD 3013518..3014684 (-) 1167 WP_075861738.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN66_RS14280 (JNN66_14280) sbcB 3014893..3016320 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  JNN66_RS14285 (JNN66_14285) tsuB 3016363..3016590 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JNN66_RS14290 (JNN66_14290) tsuA 3016604..3017662 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  JNN66_RS14295 (JNN66_14295) plaP 3017841..3019199 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN66_RS14300 (JNN66_14300) yoeI 3019189..3019251 (-) 63 WP_097415165.1 membrane protein YoeI -
  JNN66_RS14305 (JNN66_14305) yeeY 3019466..3020395 (-) 930 WP_024225462.1 LysR substrate-binding domain-containing protein -
  JNN66_RS14310 (JNN66_14310) yeeZ 3020441..3021265 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=463319 JNN66_RS14280 WP_000980557.1 3014893..3016320(+) (sbcB) [Escherichia coli strain RIVM_C029494]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=463319 JNN66_RS14280 WP_000980557.1 3014893..3016320(+) (sbcB) [Escherichia coli strain RIVM_C029494]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583