Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HW576_RS19795 Genome accession   NZ_CP058262
Coordinates   3808755..3809129 (+) Length   124 a.a.
NCBI ID   WP_223269005.1    Uniprot ID   -
Organism   Priestia megaterium strain BIM B-1314D     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3803755..3814129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW576_RS19775 (HW576_19775) - 3804246..3804917 (-) 672 WP_013058558.1 response regulator transcription factor -
  HW576_RS19780 (HW576_19780) - 3805243..3806061 (+) 819 WP_029323747.1 phytoene/squalene synthase family protein -
  HW576_RS19785 (HW576_19785) - 3806097..3808046 (-) 1950 WP_098288242.1 FUSC family protein -
  HW576_RS19790 (HW576_19790) - 3808202..3808462 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  HW576_RS19795 (HW576_19795) nucA/comI 3808755..3809129 (+) 375 WP_223269005.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HW576_RS19800 (HW576_19800) comJ 3809165..3809572 (+) 408 WP_064472036.1 competence protein ComJ -
  HW576_RS19805 (HW576_19805) helD 3809601..3811919 (-) 2319 WP_064472037.1 RNA polymerase recycling motor HelD -
  HW576_RS31380 - 3812164..3812289 (-) 126 WP_016765178.1 hypothetical protein -
  HW576_RS19810 (HW576_19810) - 3812429..3812947 (-) 519 WP_223272391.1 enoyl-CoA hydratase/isomerase family protein -
  HW576_RS19815 (HW576_19815) - 3813187..3813555 (+) 369 WP_029323759.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13661.90 Da        Isoelectric Point: 4.2601

>NTDB_id=463314 HW576_RS19795 WP_223269005.1 3808755..3809129(+) (nucA/comI) [Priestia megaterium strain BIM B-1314D]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=463314 HW576_RS19795 WP_223269005.1 3808755..3809129(+) (nucA/comI) [Priestia megaterium strain BIM B-1314D]
ATGGGACATGCGGCGTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAACTACGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGGGAAGAATCGCTGAAAGGATATCCGACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645