Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HW576_RS16665 Genome accession   NZ_CP058262
Coordinates   3276227..3276649 (+) Length   140 a.a.
NCBI ID   WP_013057949.1    Uniprot ID   A0A8D3X0F8
Organism   Priestia megaterium strain BIM B-1314D     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3271227..3281649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW576_RS16640 (HW576_16640) - 3271558..3272391 (-) 834 WP_177563654.1 AraC family transcriptional regulator -
  HW576_RS16645 (HW576_16645) - 3272615..3273436 (+) 822 WP_053487481.1 histidine kinase -
  HW576_RS16650 (HW576_16650) - 3273437..3274078 (+) 642 WP_053487482.1 response regulator transcription factor -
  HW576_RS16655 (HW576_16655) - 3274210..3275592 (+) 1383 WP_098288095.1 PepSY domain-containing protein -
  HW576_RS16660 (HW576_16660) - 3275622..3276086 (+) 465 WP_029322913.1 FixH family protein -
  HW576_RS16665 (HW576_16665) nucA/comI 3276227..3276649 (+) 423 WP_013057949.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HW576_RS16670 (HW576_16670) - 3276803..3277156 (+) 354 WP_223272376.1 DUF1516 family protein -
  HW576_RS16675 (HW576_16675) - 3277197..3277790 (-) 594 WP_057273556.1 hypothetical protein -
  HW576_RS16680 (HW576_16680) - 3277945..3278601 (-) 657 WP_013057952.1 TetR/AcrR family transcriptional regulator -
  HW576_RS16685 (HW576_16685) - 3278625..3279905 (-) 1281 WP_223269000.1 glycosyltransferase -
  HW576_RS16690 (HW576_16690) - 3280203..3280748 (+) 546 WP_098288097.1 GNAT family N-acetyltransferase -
  HW576_RS16695 (HW576_16695) - 3281048..3281533 (-) 486 WP_053487488.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=463309 HW576_RS16665 WP_013057949.1 3276227..3276649(+) (nucA/comI) [Priestia megaterium strain BIM B-1314D]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=463309 HW576_RS16665 WP_013057949.1 3276227..3276649(+) (nucA/comI) [Priestia megaterium strain BIM B-1314D]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCCGATAT
TGAATATGTAAAGCCTTCAGACAATCGAGGCGCCGGGTCTTGGATCTCACATCAAGTAGACGAGTTTCCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507